Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq64 147 3e-30 seq25 116 5e-21 >seq64 Length=2955609 Score = 147 bits (162), Expect = 3e-30 Identities = 201/276 (73%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 ||| || || ||| || ||| ||||| || || || || |||| ||| | | ||| Sbjct 1698023 CTGTATAGAACCATTATTTGCTATAATTTCGTTTTTCATGTCCTCATCCCAAAGATCTCT 1697964 Query 65147 CTCGGTTAAAACTC-TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTC 65205 || |||| | ||| ||| || || || || || | ||| ||||||||||||| |||| Sbjct 1697963 TTCAGTTAGATCTCGTAATAAG-TGAGGGTTTACAATTTGGAATTCTCCAGACAGAACTC 1697905 Query 65206 TCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAG 65265 | | | |||||||| |||||||| ||||| | || ||||||||||| |||||||| | Sbjct 1697904 TTCTTGCATAAATATTGCTGGTATATGGTTCTATGGATTCATTATTTCCTAAAATTTGTG 1697845 Query 65266 CAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG- 65324 |||| ||||| || ||||||||||| | | |||| |||||||| || ||||| | Sbjct 1697844 CAGTAGATGCTGTTGGCATAGGTGCAATTAGTAAAGAATTTCTAATTCC--ATGTTTAGC 1697787 Query 65325 -ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 65359 ||||| ||||| | | | ||||||||| | ||| Sbjct 1697786 AATTTTTTCTTTCAAAATTGTCCAATTCCATAAATC 1697751 Score = 134 bits (148), Expect = 2e-26 Identities = 221/314 (70%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 66126 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAG 66185 || || ||||| ||||||||||| | || | | ||||| |||||| |||||||| Sbjct 1696663 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCCAAA 1696604 Query 66186 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 66245 ||||| || | |||| || | ||| |||||||| ||||| | || | ||| |||||| Sbjct 1696603 TATATAGCAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATACCGAGCTGTGTTA 1696544 Query 66246 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 66305 || || ||||| | ||||||||| | |||||| ||| |||| || || || ||| | Sbjct 1696543 TTGTATACTCTGATCATTGGAATTAAACCATTAGATACACCAAGTGTACC--AGCTATTG 1696486 Query 66306 --CTTCCACTTGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 66362 | || |||| |||||| | || | | || || || || || || |||| Sbjct 1696485 GTGTACCTTTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTACTA 1696427 Query 66363 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 66422 || | ||| |||| |||||| |||||||| || || || || |||||||| |||| | Sbjct 1696426 ATAAGTGCACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCATCACTCATTGTT 1696367 Query 66423 AGTAGAAAACAGCT 66436 |||| ||| || || Sbjct 1696366 AGTAAAAAGCAACT 1696353 Score = 104 bits (114), Expect = 3e-17 Identities = 117/154 (76%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 ||| || || || ||||||| || | |||||| |||||| |||||||| || || Sbjct 1696890 TTCAAATTCATCGCCCCAAATATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGA 1696831 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 66099 ||| | || | ||| |||||||||||||| |||||||| ||||| ||||| ||| | Sbjct 1696830 CCATACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAGAGC-ATAGA 1696772 Query 66100 ATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGT 66133 |||| ||||| | ||||||||| || || ||||| Sbjct 1696771 ATAATTCTCTCGCTCTATGTTCTTCCTTACCTGT 1696738 Score = 100 bits (110), Expect = 4e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 65415 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 65474 ||| |||| || || |||| ||||| || |||| |||||||| || || ||||| ||| Sbjct 1697615 CCTTCATAAGTTTCATATGTTCCTTTCTCTGCAGCAAGTTCACAGCTAGCTTCTAAGGCA 1697556 Query 65475 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 65534 |||||||| | ||||| || || | |||| || | |||||||||| || |||||| Sbjct 1697555 CCGTAATATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCCTCACTTTCAAAT 1697496 Query 65535 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 65584 ||||| | | || |||||| ||||| | || |||| ||||| || Sbjct 1697495 GGATATCGCATTAAAAGAAACGCATCTGCGAGACCCTGAATTCCAATCCC 1697446 >seq25 Length=3544016 Score = 116 bits (128), Expect = 5e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 36427 ATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAA 36486 |||||||||||| || | | ||||||||| || || | ||||| ||||| |||||||| Sbjct 2908036 ATATGTATCAATTAATAAAGAATACATTTCTGAGTGTACATTTTCCATGGCGATTTGAAA 2908095 Query 36487 TCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATT 36546 || ||||| || | || || || || ||||||||| || ||||||||| | | ||| Sbjct 2908096 GCCATAGAAGCAACGTGCTTCTGTTATTTGTACTTCTTGACTAAATCGTTCGACGAGATT 2908155 Query 36547 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 36606 ||||| || ||||| ||| || ||||| || || || || | |||||||| ||| Sbjct 2908156 CTCATTGACAATTCCATCAGAAGCGGCAAAGAATGCTAAGACGTAAGATATAAAATGTTT 2908215 Query 36607 TTCGTTTGGT-GTTAGTTTATTCCAATC 36633 || |||| | ||| ||||||| || Sbjct 2908216 CTC-TTTGTTATTTAAACTATTCCAGTC 2908242 Score = 107 bits (118), Expect = 3e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 35954 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATAT 36013 ||| ||| |||| | | || |||||| || || || || || |||||||| |||||| Sbjct 2907275 TTACAAACCTTTTCACAGCCTAATTCAATAAGTAACCTGTCAGCAACAAATTCGATATAT 2907334 Query 36014 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 36073 ||| | || ||||||||||||||| | || ||| || | || | || | |||| Sbjct 2907335 TGACACATAAGTTTACAATTCATTCCTATCATTTCAACAGGTAAGGCATCCGTTAAAAAT 2907394 Query 36074 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGA 36133 ||||||||||| ||| || ||| | ||||| ||| | ||| ||| | ||| Sbjct 2907395 TCTTGTTCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGTTCGGAAGATGGTTTT 2907454 Query 36134 TACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 36182 | | | ||||| ||||| |||||||||||||| || ||||| |||| Sbjct 2907455 TGTATAATGTGTTTGAACATTAAACATGCGAAATCACAATGTAGTCCCT 2907503 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913 ||| |||||| ||| || ||||| ||||| ||||||||||||||| ||||||||||| Sbjct 2907100 CATTACTCCCCATTTCTGATATTCTCCCACCTTTTTTTCGAAAAAATTTGTTTTACCTTC 2907159 Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATT 35946 || || |||| ||||| ||||| || ||||| Sbjct 2907160 CAAAGAGATATGCTCCATAAAATCAAACGGATT 2907192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658149220959440