Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq64 183 4e-41 seq25 104 3e-17 >seq64 Length=2955609 Score = 183 bits (202), Expect = 4e-41 Identities = 231/313 (74%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 ||| || || ||| || ||| ||||| || || || || |||| ||| | | ||| Sbjct 1698023 CTGTATAGAACCATTATTTGCTATAATTTCGTTTTTCATGTCCTCATCCCAAAGATCTCT 1697964 Query 79026 CTCGGTTAAAACTC-TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTC 79084 || |||| | ||| ||| || || || || || | ||| ||||||||||||| |||| Sbjct 1697963 TTCAGTTAGATCTCGTAATAAG-TGAGGGTTTACAATTTGGAATTCTCCAGACAGAACTC 1697905 Query 79085 TCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAG 79144 | | | |||||||| |||||||||||||| | |||||||||||||| |||||||| | Sbjct 1697904 TTCTTGCATAAATATTGCTGGTATATGGTTCTATGGATTCATTATTTCCTAAAATTTGTG 1697845 Query 79145 CAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG- 79203 |||| ||||| |||||||||||||| | | |||| |||||||| || ||| | | Sbjct 1697844 CAGTAGATGCTGTTGGCATAGGTGCAATTAGTAAAGAATTTCTAATTCC--ATGTTTAGC 1697787 Query 79204 -ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATC 79262 ||||| ||||| | | | ||||| ||| | ||||| || ||||||||| | ||| Sbjct 1697786 AATTTTTTCTTTCAAAATTGTCCAATTCCATAAATCAGTTGGAGTAACATTCCACATATC 1697727 Query 79263 ATATTGTAGAATA 79275 |||||||| |||| Sbjct 1697726 ATATTGTAAAATA 1697714 Score = 149 bits (164), Expect = 9e-31 Identities = 224/314 (71%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 80005 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 80064 || || ||||| ||||||||||| | || | | ||||| | |||||| |||||||| Sbjct 1696663 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCCAAA 1696604 Query 80065 TATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 80124 ||||| || | |||| |||| ||| |||||||| ||||| | || | ||| |||||| Sbjct 1696603 TATATAGCAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATACCGAGCTGTGTTA 1696544 Query 80125 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 80184 || || ||||| | ||||||||| | |||||| ||| |||| || || || ||| | Sbjct 1696543 TTGTATACTCTGATCATTGGAATTAAACCATTAGATACACCAAGTGTACC--AGCTATTG 1696486 Query 80185 --CTTCCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 80241 | || | || |||||| | || | | || || || || || || |||| Sbjct 1696485 GTGTACCTTTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTACTA 1696427 Query 80242 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTA 80301 || | ||| |||| |||||| |||||||| || || || |||||||||||| |||| | Sbjct 1696426 ATAAGTGCACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCATCACTCATTGTT 1696367 Query 80302 AGTAGAAAACAGCT 80315 |||| ||| || || Sbjct 1696366 AGTAAAAAGCAACT 1696353 Score = 104 bits (114), Expect = 3e-17 Identities = 117/154 (76%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| || || || ||||||| ||| || |||||| |||| | |||||||| || || Sbjct 1696890 TTCAAATTCATCGCCCCAAATATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGA 1696831 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 79978 ||| | |||| ||| |||||||||||||| |||||||| ||||| ||||| ||| | Sbjct 1696830 CCATACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAGAGC-ATAGA 1696772 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 80012 ||| ||||| | |||||| || || || ||||| Sbjct 1696771 ATAATTCTCTCGCTCTATGTTCTTCCTTACCTGT 1696738 Score = 100 bits (110), Expect = 4e-16 Identities = 105/139 (76%), Gaps = 7/139 (5%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| |||| ||||||| || || ||||| || || || |||| || ||||| | Sbjct 1695832 CACTAAAACTTTTTGTTGTTTCTTTATGAAGATTAGAGACTGCAATTCGTGCAGCTAATA 1695773 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | |||||||||||||||| ||||| ||||| |||| ||||| ||| |||||| Sbjct 1695772 TCGCATAATCTGGATGTTTAGTAGT-------GCTGCAGTTTCAGCTGCAAGATTGTCCA 1695720 Query 80798 ATTCTACCGTTGTTACTCC 80816 |||| || || ||||| || Sbjct 1695719 ATTCAACGGTAGTTACACC 1695701 Score = 86.0 bits (94), Expect = 9e-12 Identities = 178/265 (67%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 ||||||||||| || || ||||| | ||| ||| | || ||||| || || ||||| Sbjct 1696286 CTAGACATTTGCTGTCGTCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGAGTAAAA 1696227 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 | ||| || | | ||||| || || ||| || || ||||| ||| || Sbjct 1696226 TAACGTTCTGATAAAAAGTTGTATGTTTCTATAACTTTATCAATATCTTCACCATGGATA 1696167 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 | || || || | ||||| ||| || || ||||||||||| | || || ||| || Sbjct 1696166 GCAACTGCAACTCTCATTAGCATATGTTGTGGTCTTTCAACAACTTTCCCATGTATCTTT 1696107 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 80553 || || ||| ||| || | || ||||||||||| || || || ||| |||| || Sbjct 1696106 AATAAATAACTTTTCTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAATCTCTATCA 1696047 Query 80554 TAAATAATAACCGAGTTGAGTTTAT 80578 ||||| || | || || | ||||| Sbjct 1696046 TAAATTATTGCGGAATTTAATTTAT 1696022 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| | ||||| || | | || | |||||| || || ||||| || |||||| Sbjct 1697609 TAAGTTTCATATGTTCCTTTCTCTGCAGCAAGTTCACAGCTAGCTTCTAAGGCACCGTAA 1697550 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 || | ||||| || || | |||| || | ||||||||| || ||||||||||| Sbjct 1697549 TATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCCTCACTTTCAAATGGATAT 1697490 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 | | || |||||| ||||| | || |||| ||||| || Sbjct 1697489 CGCATTAAAAGAAACGCATCTGCGAGACCCTGAATTCCAATCCC 1697446 >seq25 Length=3544016 Score = 104 bits (114), Expect = 3e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 50229 ATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAA 50288 ||| ||||| || || | | ||||||||| || || | ||||| ||||| || ||||| Sbjct 2908036 ATATGTATCAATTAATAAAGAATACATTTCTGAGTGTACATTTTCCATGGCGATTTGAAA 2908095 Query 50289 TCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATT 50348 || ||||| || | || || || || || |||||| || ||||||||| | | ||| Sbjct 2908096 GCCATAGAAGCAACGTGCTTCTGTTATTTGTACTTCTTGACTAAATCGTTCGACGAGATT 2908155 Query 50349 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTT 50408 ||||| || ||||| ||| || ||||| || || || || | |||||||||||| Sbjct 2908156 CTCATTGACAATTCCATCAGAAGCGGCAAAGAATGCTAAGACGTAAGATATAAAATGTTT 2908215 Query 50409 TTCGTTG 50415 || ||| Sbjct 2908216 CTCTTTG 2908222 Score = 102 bits (112), Expect = 1e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 49756 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATAT 49815 ||| ||| |||| | | || |||||| || || || || || |||||||| |||||| Sbjct 2907275 TTACAAACCTTTTCACAGCCTAATTCAATAAGTAACCTGTCAGCAACAAATTCGATATAT 2907334 Query 49816 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAAT 49875 ||| | || ||||||||||||||| | || ||| || | || | || | |||| Sbjct 2907335 TGACACATAAGTTTACAATTCATTCCTATCATTTCAACAGGTAAGGCATCCGTTAAAAAT 2907394 Query 49876 TCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGA 49935 ||||||||||| || |||||| | ||||| ||| | || ||| | ||| Sbjct 2907395 TCTTGTTCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGTTCGGAAGATGGTTTT 2907454 Query 49936 TGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 49984 || | | ||||| ||||| |||||||||||||| || || || |||| Sbjct 2907455 TGTATAATGTGTTTGAACATTAAACATGCGAAATCACAATGTAGTCCCT 2907503 Score = 96.9 bits (106), Expect = 5e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||| |||||| ||| || ||||| ||||| ||||||||||||||| ||||| ||||| Sbjct 2907100 CATTACTCCCCATTTCTGATATTCTCCCACCTTTTTTTCGAAAAAATTTGTTTTACCTTC 2907159 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATT 49748 ||| || |||| ||||| |||||||||||||| Sbjct 2907160 CAAAGAGATATGCTCCATAAAATCAAACGGATT 2907192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718243068020240