Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq25 120 3e-22 >seq25 Length=3544016 Score = 120 bits (132), Expect = 3e-22 Identities = 164/227 (72%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 13674 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGAC 13733 || || ||||| |||| ||| | ||||| || ||||||| ||| || ||||||||| || Sbjct 2907281 ACCTTTTCACAGCCTAATTCAATAAGTAACCTGTCAGCAACAAATTCGATATATTGACAC 2907340 Query 13734 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 13793 || | | ||||||||| ||||| | || ||||| | || ||||||||||||| | Sbjct 2907341 ATAAGTTTACAATTCATTCCTATCATTTCAACAGGTAAGGCATCCGTTAAAAATTCTTGT 2907400 Query 13794 TCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATT-AGAAGGAGGATATTT 13852 || || ||||| ||||| ||||| ||| | ||| || |||| || | || Sbjct 2907401 TCAATTTTGACAGCATCTTTAATAATTGATGTGA----CTCGTTCGGAAGATGGTTTTTG 2907456 Query 13853 TAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13896 || | ||||| || |||||||| || ||||||||||| || |||| Sbjct 2907457 TATAATGTGTTTGAACATTAAACATGCGAAATCACAATGTAGTCCCT 2907503 Score = 114 bits (126), Expect = 1e-20 Identities = 167/231 (72%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 14099 TTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAG 14158 ||||||| | | | |||| | |||| ||||| | | || || ||||||||||| | Sbjct 2907994 TTCAATAAC--TGACTAAAAAAACCTT-TCTTTGGCATCTGCGATATATGTATCAATTAA 2908050 Query 14159 TAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCT 14218 ||| ||||||||| ||||||| |||||||| || || ||||| ||||| ||||| | Sbjct 2908051 TAAAGAATACATTTCTGAGTGTACATTTTCCATGGCGATTTGAAAGCCATAGAAGCAACG 2908110 Query 14219 AGCTTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATAC 14277 ||||| | ||||||||| || | ||||| |||| | | ||| ||||| || || | Sbjct 2908111 TGCTTCTGTTATTTGTACTTCTTGACT-AAATCGTTCGACGAGATTCTCATTGACAATTC 2908169 Query 14278 CATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTT 14328 ||||| ||| ||||| ||||| || | || ||||| | || ||||| Sbjct 2908170 CATCAGAAGCGGCAAAGAATGCTAAGACGTAAGATATAAAATGTTTCTCTT 2908220 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955 ||||||||| |||||| || || |||||| | ||| ||||| | |||| |||||| Sbjct 2907697 TCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCCGGCATAAGACCTCTTTTTTTC 2907756 Query 13956 AACCAAAATATTGCAGCAAA--TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||||| || || |||||||| || | | ||||| |||| || || ||||||||||| | Sbjct 2907757 AACCAGAAAATAGCAGCAAAACTGCCGCTGAAAA--ATATACCTTCCACTGCAGCAAATG 2907814 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | | || ||||| |||| || ||| | |||||| ||| ||||| | || Sbjct 2907815 CAACTACACGTTCAGGGAACGTGGCACTTTCATGGTTTATCCAATTTAATGCCCACTGAG 2907874 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14115 ||||||| ||| | | | | ||||| |||||||||| Sbjct 2907875 CTTTTTTTGTAACACATGGTAAATTCTCAATTGCATTAAATA 2907916 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 13520 AAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCAT 13579 ||| ||||| ||| ||| | || |||| | ||| || | || || || ||| Sbjct 2907052 AAATTAAAATTCAGCATTAACTGTAAAATTGCTCTCGACTCTATTTTGCATTACTCCCCA 2907111 Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| |||||||| | || ||||||| || || || ||||||||||||| || |||| Sbjct 2907112 TTTCTGATATTCTCCCACCTTTTTTTCGAAAAAATTTGTTTTACCTTCCAAAGAGATATG 2907171 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATA 13670 |||||||||||||| |||||| |||||| Sbjct 2907172 CTCCATAAAATCAAACGGATTTTCAGACATA 2907202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479710813744400