Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq25 105 6e-18 >seq25 Length=3544016 Score = 105 bits (116), Expect = 6e-18 Identities = 163/228 (71%), Gaps = 10/228 (4%) Strand=Plus/Plus Query 13462 ACTTTATCACAACCTAGTTCTAATAA-TAATCTATCAGCAATAAACTCAATATATTGAGA 13520 || || ||||| |||| ||| ||||| ||| || ||||||| ||| || ||||||||| | Sbjct 2907281 ACCTTTTCACAGCCTAATTC-AATAAGTAACCTGTCAGCAACAAATTCGATATATTGACA 2907339 Query 13521 CATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTT 13580 ||| | | ||||||||| ||||| | || ||||| | || ||||||||||||| Sbjct 2907340 CATAAGTTTACAATTCATTCCTATCATTTCAACAGGTAAGGCATCCGTTAAAAATTCTTG 2907399 Query 13581 TTCTATAGACACAGCCTCGTTTATAATA-ATCTTAATAATGTCATTAGAAGGAGGATATT 13639 ||| || ||||| || || ||||| || | | | | | |||| || | || Sbjct 2907400 TTCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGT----TCGGAAGATGGTTTTT 2907455 Query 13640 TTAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13684 || | ||||| || |||||||| || ||||||||||| || |||| Sbjct 2907456 GTATAATGTGTTTGAACATTAAACATGCGAAATCACAATGTAGTCCCT 2907503 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/208 (72%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 |||| ||||| | | || || ||||||||||| | ||| ||||||||| ||||||| Sbjct 2908015 CCTT-TCTTTGGCATCTGCGATATATGTATCAATTAATAAAGAATACATTTCTGAGTGTA 2908073 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-C 14028 ||||| || || || ||||| ||||| || || | ||||||| |||||| || Sbjct 2908074 CATTTTCCATGGCGATTTGAAAGCCATAGAAGCAACGTGCTTCTGTTATTTGTACTTCTT 2908133 Query 14029 GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC 14088 || | ||||| ||| | | || ||||| ||||| |||||| ||| ||||| ||||| Sbjct 2908134 GACT-AAATCGTTCGACGAGATTCTCATTGACAATTCCATCAGAAGCGGCAAAGAATGCT 2908192 Query 14089 AATATGTTTTTAATAAAGTATTGCTCTT 14116 || | || ||||| | || ||||| Sbjct 2908193 AAGACGTAAGATATAAAATGTTTCTCTT 2908220 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 13684 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13743 ||||||||| |||||| || || |||||| | ||| ||||| | |||| |||||| Sbjct 2907697 TCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCCGGCATAAGACCTCTTTTTTTC 2907756 Query 13744 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 13803 ||||| || || ||||| || ||| || ||||| || || ||||||||||| || Sbjct 2907757 AACCAGAAAATAGCAGCAAAACTGCCGCTGAAAAATATACCTTCCACTGCAGCAAATGCA 2907816 Query 13804 ATTAGTCGTTCTCCAAACGATG--CTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 | || ||||| |||| | |||| || || |||||| ||| ||||| | || Sbjct 2907817 ACTACACGTTCAGGGAACGTGGCACTTTCATGGTT--TATCCAATTTAATGCCCACTGAG 2907874 Query 13862 AtttttttttAA 13873 ||||||| ||| Sbjct 2907875 CTTTTTTTGTAA 2907886 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 13308 AAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCAT 13367 ||| ||||| ||| ||| | || |||| | ||| || | || || || ||| Sbjct 2907052 AAATTAAAATTCAGCATTAACTGTAAAATTGCTCTCGACTCTATTTTGCATTACTCCCCA 2907111 Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| |||||||| | || ||||||| ||||| || ||||||||||||| || |||| Sbjct 2907112 TTTCTGATATTCTCCCACCTTTTTTTCGAAAAAATTTGTTTTACCTTCCAAAGAGATATG 2907171 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATA 13458 ||||||||||| || |||||| |||||| Sbjct 2907172 CTCCATAAAATCAAACGGATTTTCAGACATA 2907202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478571654556240