Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq65 123 2e-23 seq190 114 1e-20 >seq65 Length=2871674 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | || |||||||| | ||| ||| |||| ||||||||||||||||| || Sbjct 611596 TCCTTTTGGATGTTATAATCGGAAAGTGTGCGTCCGTCTTCCAATTGTTTGCCGGCGAAG 611655 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 ||||||| ||| ||||| | ||| | ||||||||| || ||| ||| | || || | Sbjct 611656 ATCAATCTCTGCTGATCTGGCGGAATACCTTCTTTATC-CTGAATCTTGGCCTTAACATT 611714 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| |||||| |||||| || || | || || ||||| || || || || || || Sbjct 611715 CTCAATTGTGTCAGAAGCCTCAACTTCAAGGGTAATGGTTTTACCTGTGAGGGTCTTGAC 611774 Query 43098 AAAAATTTGCAT 43109 ||||||||||| Sbjct 611775 GAAAATTTGCAT 611786 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | ||| ||||| ||||||||||| || || || |||||||||||||| || Sbjct 610911 CTCCTTTTGGATATTATAATCAGACAATGTACGATCATCTTCTAATTGTTTGCCGGCGAA 610970 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||| | ||| ||||| | || | |||||||| || ||| | || || | Sbjct 610971 GATCAACCTCTGCTGATCTGGTGGAATGCCTTCTTTATCTTGAATCTTGGCCTTAACATT 611030 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| |||||| |||||| || || | || || ||||| || || || || || || Sbjct 611031 CTCAATTGTGTCAGAAGCCTCAACCTCAAGGGTAATGGTTTTACCTGTGAGGGTCTTGAC 611090 Query 43098 AAAAATTTGCAT 43109 ||||||||||| Sbjct 611091 GAAAATTTGCAT 611102 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | || ||||| || | ||| ||| |||| |||||||||||||| || ||| Sbjct 610684 TCTTTTTGAATGTTATAATCAGAAAGTGTGCGTCCGTCTTCCAATTGTTTGCCAGCGAAA 610743 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 ||||||| ||| || || | || | ||||| || || ||| || ||||||| | Sbjct 610744 ATCAATCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTC-CTGAATTTTGGCTTTGACATT 610802 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| |||||| ||||| || || | || |||||||| || || ||||| || || Sbjct 610803 TTCAATTGTGTCAGAGGCCTCAACTTCAAGGGTAATAGTTTTACCCGTGAGAGTCTTAAC 610862 Query 43098 AAAAATTTGCATT 43110 |||||||||||| Sbjct 610863 GAAAATTTGCATT 610875 Score = 105 bits (116), Expect = 5e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||| |||||||| | ||| ||| | || |||||||| ||||||||||| Sbjct 611824 TCCTTTTGAATATTATAATCGGAAAGTGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAG 611883 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 ||||||| || ||||| | || | || || || || ||| || ||||||| | Sbjct 611884 ATCAATCTTTGCTGATCTGGTGGAATTCCCTCCTTGTC-CTGAATTTTTGCTTTGACATT 611942 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| || || || || || || | || ||||| ||||| || |||||||| || Sbjct 611943 TTCAATGGTATCAGACGCTTCAACCTCCAAGGTAATAGTCTTTCCAGTAAGAGTTTTTAC 612002 Query 43098 AAAAATTTGCAT 43109 |||||||||||| Sbjct 612003 AAAAATTTGCAT 612014 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | || ||||| || | ||| ||| | || || | |||||| || |||||| Sbjct 611140 TCCTTTTGGATGTTATAATCCGAAAGTGTGCGTCCATCTTCAAGTTGTTTTCCAGCAAAA 611199 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 ||||||| || ||||| | ||| | ||||||||| || ||| ||| | || || | Sbjct 611200 ATCAATCTTTGCTGATCTGGCGGAATACCTTCTTTATC-CTGAATCTTGGCCTTAACATT 611258 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| |||||| |||||| || || | || || ||||| || || || || || || Sbjct 611259 CTCAATTGTGTCAGAAGCCTCAACTTCAAGGGTAATGGTTTTACCTGTGAGGGTCTTGAC 611318 Query 43098 AAAAATTTGCAT 43109 ||||||||||| Sbjct 611319 GAAAATTTGCAT 611330 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | || ||||| || | ||| ||| | || || | |||||| || |||||| Sbjct 611368 TCCTTTTGGATGTTATAATCCGAAAGTGTGCGTCCATCTTCAAGTTGTTTTCCAGCAAAA 611427 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 ||||||| || ||||| | ||| | ||||||||| || ||| ||| | || || | Sbjct 611428 ATCAATCTTTGCTGATCTGGCGGAATACCTTCTTTATC-CTGAATCTTGGCCTTAACATT 611486 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| |||||| |||||| || || | || || ||||| || || || || || || Sbjct 611487 CTCAATTGTGTCAGAAGCCTCAACTTCAAGGGTAATGGTTTTACCTGTGAGGGTCTTGAC 611546 Query 43098 AAAAATTTGCAT 43109 ||||||||||| Sbjct 611547 GAAAATTTGCAT 611558 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | |||||| || || | ||||||| |||| |||||||| |||||||| || Sbjct 612052 TCCTTCTGAATATTGTAGTCTGAAAGTGTACGTCCGTCTTCCAATTGCTTGCCGGCGAAG 612111 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||| || ||||| | || | |||||||| || ||| |||| || | Sbjct 612112 ATCAATCTTTGCTGATCTGGTGGAATGCCTTCTTTATCTTGGATTTTTGCTTTAACGTTT 612171 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| || || ||||| || || | || || ||||| || || ||||| || || Sbjct 612172 TCAATCGTATCTGAGGCCTCAACTTCGAGTGTAATTGTTTTACCAGTGAGAGTCTTGACG 612231 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 612232 AAAATTTGCAT 612242 >seq190 Length=691288 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| || |||| || |||||||||| || |||||||| | ||||||||| || Sbjct 260525 GCCTCCTCGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCCGA 260466 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || | | | || || ||||| ||||| ||||||||||| || ||||| || | || Sbjct 260465 AAGAGTTCTTCCATCTTCTAATTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGAGG 260406 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| |||| || | | | ||| || || || || Sbjct 260405 AATTCCTTCTTTATCTTGGATTTTAGCTTTCACATTCTCTATTGTATCTGAGGCTTCTAC 260346 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||||||||| || || ||||| |||||||||||||| Sbjct 260345 CTCAAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAAATTTGCAT 260298 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| |||| || |||||||||| || |||||||| | ||| ||||| || Sbjct 255522 GCCGCCACGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCCGA 255463 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || | | || || ||||||||||| |||||||||| || |||||||| | || Sbjct 255462 AAGAGTTCTCCCATCTTCTAATTGTTTGCCAGCAAAAATCAGACGTTGTTGATCAGGGGG 255403 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || || | || || | | | |||||| |||||| || Sbjct 255402 AATTCCTTCTTTGTCTTGAATTTTTGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTAC 255343 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||||||||| || || ||||| ||||| || ||||| Sbjct 255342 CTCAAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCAT 255295 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| || |||||||||| || |||||||| | ||| ||||| || Sbjct 255293 CCGCCACGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCCGAA 255234 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || || ||||||||||| |||||||||| || |||||||| | || Sbjct 255233 AGAGTTCTCCCATCTTCTAATTGTTTGCCAGCAAAAATCAGACGTTGTTGATCAGGGGGA 255174 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || || | || || | | | |||||| |||||| || Sbjct 255173 ATTCCTTCTTTGTCTTGAATTTTTGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTACC 255114 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||||||||| || || ||||| ||||| || ||||| Sbjct 255113 TCAAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCAT 255067 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| |||| || |||||||||| || |||||||| | ||| ||||| || Sbjct 260069 GCCGCCACGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGA 260010 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || | | | || || || |||||||| ||||| ||||| || || ||||| | || Sbjct 260009 CAAAGTTCTTCCATCCTCTAACTGTTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGTGG 259950 Query 43002 CACACCTTCTTTTTCGCTGATCAACT-CTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | ||||| || || |||| | | || || | | | |||||| ||| || | Sbjct 259949 AATTCCTTCCTTGTC-CTGAATTTTTGCCTTAACATTTTCGATTGTGTCAGAAGCTTCAA 259891 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || ||||||||||| |||| || || ||||| || ||||| Sbjct 259890 CTTCAAGAGTAATAGTTTTTCCTGTTAAGGTCTTAACAAAGATCTGCAT 259842 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| |||| || ||||| || | ||| || || || | ||||||||| || Sbjct 255066 GCCGCCACGAAGTCGCAATACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAATCTGA 255007 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || | | | || || |||||||| || ||||||||||| ||||| || || | || Sbjct 255006 GAGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGCTGCTGGTCTGGAGG 254947 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || |||| |||| || | | | |||||| ||| || || Sbjct 254946 AATTCCCTCTTTGTCTTGGATCTTTGCTTTCACATTTTCTATTGTGTCAGAAGCTTCAAC 254887 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||||||||| |||| || || ||||| || ||||| Sbjct 254886 TTCAAGAGTAATAGTTTTTCCTGTTAAGGTCTTAACAAAGATCTGCAT 254839 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| || ||||| ||||||||||||| ||| |||||| || | ||||| || || Sbjct 260297 GCCTCCTCGAAGTCTCAACACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGA 260238 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || | | || || |||||||| || || || || || || || || || | || Sbjct 260237 AAGAGTTCTCCCATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGG 260178 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || || | | || || | | | |||||| |||||| || Sbjct 260177 AATTCCTTCTTTGTCTTGAATTTTCGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTAC 260118 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||||||||| || || ||||| ||||| || ||||| Sbjct 260117 CTCGAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCAT 260070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381356278998228