Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq64 156 6e-33 seq25 100 4e-16 >seq64 Length=2955609 Score = 156 bits (172), Expect = 6e-33 Identities = 204/280 (73%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||| || || ||| || ||| ||||| ||||| || || |||| ||| | | ||| Sbjct 1698023 CTGTATAGAACCATTATTTGCTATAATTTCGTTTTTCATGTCCTCATCCCAAAGATCTCT 1697964 Query 71109 CTCGGTTAAAACTC-TAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTC 71167 || |||| | ||| ||| || ||||| || || | ||| ||||||||||||| |||| Sbjct 1697963 TTCAGTTAGATCTCGTAATAAG-TGAGGGTTTACAATTTGGAATTCTCCAGACAGAACTC 1697905 Query 71168 TACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAG 71227 | | | |||||||| |||||||| ||||| | || ||||||||||| |||||||| | Sbjct 1697904 TTCTTGCATAAATATTGCTGGTATATGGTTCTATGGATTCATTATTTCCTAAAATTTGTG 1697845 Query 71228 CAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGA 71287 |||| ||||| || ||||||||||| | | || | |||||||| |||||| | Sbjct 1697844 CAGTAGATGCTGTTGGCATAGGTGCAATTAGTAAAGAATTTCTAATTCCATGTTTAGCAA 1697785 Query 71288 TTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGG 71327 |||| ||||| | | | ||||||||| | ||| | ||| Sbjct 1697784 TTTTTTCTTTCAAAATTGTCCAATTCCATAAATCAGTTGG 1697745 Score = 138 bits (152), Expect = 2e-27 Identities = 222/315 (70%), Gaps = 8/315 (3%) Strand=Plus/Minus Query 72088 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 72147 || || ||||| ||||||||||| | || | | ||||| | |||||| |||||||| Sbjct 1696663 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCCAAA 1696604 Query 72148 TATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 72207 ||||| || | |||| || | ||| |||||||| ||||| | || | ||| |||||| Sbjct 1696603 TATATAGCAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATACCGAGCTGTGTTA 1696544 Query 72208 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 72267 || || ||||| | ||||||||| | |||||| ||| ||||| || || || ||| | Sbjct 1696543 TTGTATACTCTGATCATTGGAATTAAACCATTAGATACACCAAGTGTACC--AGCTATTG 1696486 Query 72268 --CTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 72323 | || | || ||||| | || ||| || || || || || || |||| Sbjct 1696485 GTGTACCTTTTGCTCGAATACAATGTACATT--AAGTCCAATACCACCAGCTGATTTACT 1696428 Query 72324 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTT 72383 || | ||| |||| |||||| |||||||| || || || || |||||||| |||| | Sbjct 1696427 AATAAGTGCACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCATCACTCATTGT 1696368 Query 72384 AAGTAGAAAACAGCT 72398 |||| ||| || || Sbjct 1696367 TAGTAAAAAGCAACT 1696353 Score = 132 bits (146), Expect = 6e-26 Identities = 267/391 (68%), Gaps = 14/391 (4%) Strand=Plus/Minus Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 |||| |||||||||||||| ||| || ||| |||| ||||| ||||| || |||| Sbjct 1697374 TACCTATAGGTCTGTGTCTAAAATTTGATGTTTTCGCTTGTGGAACTGGATAGTAGTTAA 1697315 Query 71603 TATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTTAGTTTGA 71659 ||| |||||||||| ||||| | | || ||| |||| || | | ||||| Sbjct 1697314 CATCGATAATTTTATCTAGATTACAAGTAACAATT--TTTG-TAACTTGCAAAAGTTTTT 1697258 Query 71660 GAAAATCAAATCTCCCATCTA------TTACAAACACGTTCAAGGCAACAGATGCCAGAT 71713 ||||||||||| | | || | ||||||||| || | || | || |||| || Sbjct 1697257 GAAAATCAAATGTTCGATTGAGAGGATTTACAAACATATTGACCGCGATTGAAGCCAAAT 1697198 Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTAC 71773 |||| || || | |||| | | || | | |||| ||||| || || | |||||||| Sbjct 1697197 TACACACAGCGATTTCATCTGGACTGGAAAACTGTACGATTTCTGTACACAAATTACTAC 1697138 Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833 ||||| ||||||| |||||| ||||| || || || ||| |||||||| | Sbjct 1697137 TTTTGATTGTTCCTATATTTTGATGATTTGATTTACGATTGCAATGATCTTTATAAAGCA 1697078 Query 71834 TAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 71893 || | ||||| || ||||||| |||| | | ||| ||| |||| | ||| || || Sbjct 1697077 TATAAGGAGTTCCTGTTTCAACTTGAGCGACAAGAATAGCTGTCCATAAATCTCTAG-CT 1697019 Query 71894 TTATTATATTCTTGTATCTCTTTTCTCTTTC 71924 | | | | | | ||| ||||||||| ||| Sbjct 1697018 TGAATCT-GACGTTTATATCTTTTCTCATTC 1696989 Score = 95.1 bits (104), Expect = 2e-14 Identities = 104/139 (75%), Gaps = 7/139 (5%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||| |||| ||||||| || || ||||| || || || |||| || |||| | Sbjct 1695832 CACTAAAACTTTTTGTTGTTTCTTTATGAAGATTAGAGACTGCAATTCGTGCAGCTAATA 1695773 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | |||||||||||||||| ||||| ||||| |||| ||||| ||| |||||| Sbjct 1695772 TCGCATAATCTGGATGTTTAGTAGT-------GCTGCAGTTTCAGCTGCAAGATTGTCCA 1695720 Query 72881 ATTCTACCGTTGTTACTCC 72899 |||| || || ||||| || Sbjct 1695719 ATTCAACGGTAGTTACACC 1695701 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||| || || || |||||| || || |||||| |||||| |||||||| || || Sbjct 1696890 TTCAAATTCATCGCCCCAAATATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGA 1696831 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 72061 ||| | |||| || |||||||||||||| |||||||| ||||| ||||| ||| | Sbjct 1696830 CCATACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAGAGC-ATAGA 1696772 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 72095 ||| ||||| | |||||| || || || ||||| Sbjct 1696771 ATAATTCTCTCGCTCTATGTTCTTCCTTACCTGT 1696738 Score = 91.5 bits (100), Expect = 2e-13 Identities = 179/265 (68%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||||||||| || || ||||| | ||| ||| | || ||||| || || ||||| Sbjct 1696286 CTAGACATTTGCTGTCGTCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGAGTAAAA 1696227 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 | ||| || | | ||||| || || ||| || || ||||| ||| || Sbjct 1696226 TAACGTTCTGATAAAAAGTTGTATGTTTCTATAACTTTATCAATATCTTCACCATGGATA 1696167 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 72576 | || || || | ||||| |||||| || ||||||||||| | || || ||| || Sbjct 1696166 GCAACTGCAACTCTCATTAGCATATGTTGTGGTCTTTCAACAACTTTCCCATGTATCTTT 1696107 Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 72636 || || || ||| || | || ||||||||||| || || || ||| |||| || Sbjct 1696106 AATAAATAACTTTTCTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAATCTCTATCA 1696047 Query 72637 TAAATAATAACCGAATTGAGTTTAT 72661 ||||| || | ||||| | ||||| Sbjct 1696046 TAAATTATTGCGGAATTTAATTTAT 1696022 Score = 86.0 bits (94), Expect = 8e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 71377 CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCT 71436 ||| |||| || || |||| ||||| | | | || |||||||| || || ||||| || Sbjct 1697615 CCTTCATAAGTTTCATATGTTCCTTTCTCTGCAGCAAGTTCACAGCTAGCTTCTAAGGCA 1697556 Query 71437 CCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAAT 71496 || ||||| | ||||| || || | |||| || | |||||||||| || |||||| Sbjct 1697555 CCGTAATATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCCTCACTTTCAAAT 1697496 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACC 71546 ||||| | | || |||||| ||||| | || |||| ||||| || Sbjct 1697495 GGATATCGCATTAAAAGAAACGCATCTGCGAGACCCTGAATTCCAATCCC 1697446 >seq25 Length=3544016 Score = 100 bits (110), Expect = 4e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 42334 ATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAA 42393 ||||||||| || || | | |||||||||||| || | ||||| ||||| || ||||| Sbjct 2908036 ATATGTATCAATTAATAAAGAATACATTTCTGAGTGTACATTTTCCATGGCGATTTGAAA 2908095 Query 42394 TCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATT 42453 || ||||| || | || || || | ||||||||| || ||||||||| | | ||| Sbjct 2908096 GCCATAGAAGCAACGTGCTTCTGTTATTTGTACTTCTTGACTAAATCGTTCGACGAGATT 2908155 Query 42454 TTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 42513 || || || ||||| ||| || ||||| || || || || | |||||||| ||| Sbjct 2908156 CTCATTGACAATTCCATCAGAAGCGGCAAAGAATGCTAAGACGTAAGATATAAAATGTTT 2908215 Query 42514 TTC 42516 || Sbjct 2908216 CTC 2908218 Score = 93.3 bits (102), Expect = 6e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41861 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATAT 41920 ||| ||| |||| | | || |||||| || || || || || | ||||| |||||| Sbjct 2907275 TTACAAACCTTTTCACAGCCTAATTCAATAAGTAACCTGTCAGCAACAAATTCGATATAT 2907334 Query 41921 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 41980 ||| | || ||||||||||||||| | || ||| || | || | || | |||| Sbjct 2907335 TGACACATAAGTTTACAATTCATTCCTATCATTTCAACAGGTAAGGCATCCGTTAAAAAT 2907394 Query 41981 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGA 42040 ||||||||||| ||| || ||| | ||||| ||| | ||| ||| | ||| Sbjct 2907395 TCTTGTTCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGTTCGGAAGATGGTTTT 2907454 Query 42041 TACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 42089 | | | ||||| ||||| |||||||||||||| || || || |||| Sbjct 2907455 TGTATAATGTGTTTGAACATTAAACATGCGAAATCACAATGTAGTCCCT 2907503 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 ||| |||||| ||| || ||||| ||||| ||||||||||||||| || || ||||| Sbjct 2907100 CATTACTCCCCATTTCTGATATTCTCCCACCTTTTTTTCGAAAAAATTTGTTTTACCTTC 2907159 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATT 41853 ||| || |||| ||||| |||||||||||||| Sbjct 2907160 CAAAGAGATATGCTCCATAAAATCAAACGGATT 2907192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671115156438160