Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq190 134 1e-26 seq65 91.5 1e-13 >seq190 Length=691288 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 143032 ||||||||||| | ||||||||| ||||| ||||||||||| || || || ||| Sbjct 256418 AAAACTAAATGGAGTGTAGATTCCTTTTGAATGTTGTAATCCAACAAAGTTCTTCCATCT 256359 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092 || | || || |||||| |||||| |||||||||||| ||||| || ||||||||||| Sbjct 256358 TCTAACTGCTTCCCAGCAAAGATCAAACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCT 256299 Query 143093 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTC 143152 |||||| ||| | | ||| | ||||| | | ||||||||| | ||| | || Sbjct 256298 TGAATTTTAGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCTACTTCCAAAGTGATGGTT 256239 Query 143153 TTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || | ||| || || || |||||||| Sbjct 256238 TTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 256207 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||||||||| | | ||| || | ||||| ||| |||||||| |||||||| ||||| Sbjct 256206 GCCTCCTCGGAGTCTCAATACAAGATGAAGTGTTGATTCTTTCTGTATGTTATAATCTGA 256147 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || || || || | ||||||||||| |||||| ||| ||||| || ||||| Sbjct 256146 CAGAGTTCTTCCATCCTCTAACTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGAGG 256087 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| |||||| ||| | | || | ||||| | | |||||| Sbjct 256086 AATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTCTCTATTGTGTCTGAAGCTTCTAC 256027 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | || || || ||||||||||| || || |||||||| Sbjct 256026 TTCTAACGTGATGGTTTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 255979 Score = 125 bits (138), Expect = 7e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||||||||| | | |||||| | ||| | ||| |||||||| || ||||| ||||| Sbjct 255978 GCCTCCTCGAAGTCTCAAAACAAGATGGAGTGTTGATTCTTTCTGAATGTTATAATCTGA 255919 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || ||| || || | |||||||||||| |||| | ||||||||| || ||||| Sbjct 255918 CAGAGTTCTCCCATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGG 255859 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| |||||| ||| | | ||| | ||||| | | |||||| Sbjct 255858 AATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCTATTGTGTCAGAAGCTTCTAC 255799 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||| | || | ||||| || || | ||||| || || || |||||| || Sbjct 255798 TTCCAAGGTGATGGTCTTACCTGTGAGCGTTTTAACAAAAATCTGCATACCT 255747 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||||| || ||||| | ||||||||| ||||| || || ||||| Sbjct 255522 GCCGCCACGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCCGA 255463 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || ||| ||||| | |||||| |||||| | ||||||||||| ||||| || || Sbjct 255462 AAGAGTTCTCCCATCTTCTAATTGTTTGCCAGCAAAAATCAGACGTTGTTGATCAGGGGG 255403 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||||||| || | | || | ||||| | | ||||| Sbjct 255402 AATTCCTTCTTTGTCTTGAATTTTTGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTAC 255343 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | || || || || | |||||| || || || |||||| Sbjct 255342 CTCAAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCATA 255294 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 ||||| || ||||| | ||||||||| ||||| || || ||||| | || ||| Sbjct 255281 CGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCCGAAAGAGTTCTCCCA 255222 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| | |||||| |||||| | ||||||||||| ||||| || || || ||||||||| Sbjct 255221 TCTTCTAATTGTTTGCCAGCAAAAATCAGACGTTGTTGATCAGGGGGAATTCCTTCTTTG 255162 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||||||| || | | || | ||||| | | ||||| |||| ||| | Sbjct 255161 TCTTGAATTTTTGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTACCTCAAGAGTAATA 255102 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || || | |||||| || || || ||||| Sbjct 255101 GTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCAT 255067 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||||| || | ||| | ||| |||||||| || ||||| || || | Sbjct 255749 CCTCCTCGGAGTCGCAATACAAGATGGAGTGTTGATTCTTTCTGAATGTTATAGTCTGAC 255690 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || ||| ||||| | |||||||||||| |||||| ||| ||||| || ||||| Sbjct 255689 AGAGTTCTCCCATCTTCTAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 255630 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| || ||| ||| | | || | ||| | | | ||||||| Sbjct 255629 ATTCCCTCTTTGTCTTGGATCTTTGTTTTCACGTTCTCTATTGTGCCAGAAGCTTCTACT 255570 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || ||||||||||| || || || ||||| Sbjct 255569 TCCAAGGTGATGGTTTTTCCTGTCAATGTTTTGACAAAGATCTGCAT 255523 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||||| || || |||| ||||||||||| || || |||||||| Sbjct 255066 GCCGCCACGAAGTCGCAATACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAATCTGA 255007 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || ||||| | ||||||||||||| | |||| ||| ||||| || ||||| Sbjct 255006 GAGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGCTGCTGGTCTGGAGG 254947 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| || ||| ||| | | ||| | ||||| | | ||| || Sbjct 254946 AATTCCCTCTTTGTCTTGGATCTTTGCTTTCACATTTTCTATTGTGTCAGAAGCTTCAAC 254887 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| ||| | || || || || || || || || || || |||||| Sbjct 254886 TTCAAGAGTAATAGTTTTTCCTGTTAAGGTCTTAACAAAGATCTGCATA 254838 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||||| || ||||| | ||||||||| ||||| || || ||||| Sbjct 260069 GCCGCCACGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGA 260010 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || || || || | ||||| |||||| |||||| ||||||||||| || || Sbjct 260009 CAAAGTTCTTCCATCCTCTAACTGTTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGTGG 259950 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||||||| || | | ||| | ||||| | | ||| || Sbjct 259949 AATTCCTTCCTTGTCCTGAATTTTTGCCTTAACATTTTCGATTGTGTCAGAAGCTTCAAC 259890 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| ||| | || || || || || || || || || || ||||| Sbjct 259889 TTCAAGAGTAATAGTTTTTCCTGTTAAGGTCTTAACAAAGATCTGCAT 259842 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||||||||| | | ||| || ||||| | ||||| || || || |||||||| || Sbjct 260297 GCCTCCTCGAAGTCTCAACACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGA 260238 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || ||| || || | |||||||||||| |||| | ||||||||| || ||||| Sbjct 260237 AAGAGTTCTCCCATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGG 260178 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| |||||| || | | || | ||||| | | ||||| Sbjct 260177 AATTCCTTCTTTGTCTTGAATTTTCGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTAC 260118 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || || | |||||| || || || ||||| Sbjct 260117 CTCGAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCAT 260070 >seq65 Length=2871674 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || ||||| | ||| | || | |||| || ||||||||||| ||||| ||||| Sbjct 610645 TGACCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATGTTATAATCA 610704 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | ||||| |||||| | |||||| ||||| | |||| | ||||| || || Sbjct 610705 GAAAGTGTGCGTCCGTCTTCCAATTGTTTGCCAGCGAAAATCAATCTCTGCTGGTCTGGG 610764 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || ||||| ||||| |||||| ||| | | ||| | ||||| | || || Sbjct 610765 GGAATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTTTCAATTGTGTCAGAGGCCTCA 610824 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||| || | || || || || | || || ||||| |||||||| Sbjct 610825 ACTTCAAGGGTAATAGTTTTACCCGTGAGAGTCTTAACGAAAATTTGCAT 610874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506996236209120