Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq190 104 1e-17 seq65 98.7 6e-16 seq2840 93.3 3e-14 seq26 93.3 3e-14 >seq190 Length=691288 Score = 104 bits (114), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||||||| | ||| || || ||||| ||||||||||| || | | | | Sbjct 260512 CGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCCGAAAGAGTTCTTCCA 260453 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || || |||||||| ||| ||| || |||||||| ||||| | || || |||||||| Sbjct 260452 TCTTCTAATTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTA 260393 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || | | || || || || || || || ||||| Sbjct 260392 TCTTGGATTTTAGC---TTTCACATTCTCTATTGTATCTGAGGCTTCTACCTCAAGAGTA 260336 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || |||||||| || || ||||| || |||||||||||| Sbjct 260335 ATAGTTTTTCCTGTGAGTGTTTTGACAAAAATTTGCATG 260297 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 33158 AACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCA 33217 || || ||||| | ||| || || ||||| || |||||||| ||||| | | || Sbjct 256418 AAAACTAAATGGAGTGTAGATTCCTTTTGAATGTTGTAATCCAACAAAGTTCTTCCATCT 256359 Query 33218 TCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCG 33277 || || ||||| ||| ||| || ||||||||||| || | || || |||||||| || Sbjct 256358 TCTAACTGCTTCCCAGCAAAGATCAAACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCT 256299 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 ||| ||| || ||| || ||||| | || || |||| ||| || ||| Sbjct 256298 TGAATTTTAGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCTACTTCCAAAGTGATGGTT 256239 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| || || || || || || ||||||||| Sbjct 256238 TTTCCTGTGAGTGTCTTGACAAAGATTTGCATG 256206 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/217 (69%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| ||||||| || || || ||||| || || ||||| ||||| | || Sbjct 260738 CAACACTAAATGCAGAGTAGATTCCTTTTGAATGTTATAATCCAACAAAGTTCTCCCATC 260679 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 || |||||||| ||| ||| || |||||||||||||| | || || ||||| || || Sbjct 260678 TTCTAATTGCTTCCCAGCAAAGATCAAACGTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 260619 Query 33277 GCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 || ||||| || || ||| || || || | || || |||| || || Sbjct 260618 TTGAATTTTCGCC---TTAACATTTTCGATTGTATCAGAAGCTTCTACTTCCAAGGTAAT 260562 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| || || || ||||| ||||| ||||||||| Sbjct 260561 GGTTTTCCCTGTGAGTGTTTTGACGAAGATTTGCATG 260525 >seq65 Length=2871674 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 ||||| |||||||| || || |||||||| | || || ||| |||||||| || ||| Sbjct 610678 GTCGATTCTTTTTGAATGTTATAATCAGAAAGTGTGCGTCCGTCTTCCAATTGTTTGCCA 610737 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 || || || | |||||||| | ||| || ||||| || || ||| ||| Sbjct 610738 GCGAAAATCAATCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGAATTTTGGCTTTG 610797 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || ||| ||| ||||| || | ||| || || || || ||||| ||||| ||||| Sbjct 610798 ACATTTTCAATTGTGTCAGAGGCCTCAACTTCAAGGGTAATAGTTTTACCCGTGAGAGTC 610857 Query 33353 TTTACGAAAATTTGCAT 33369 || |||||||||||||| Sbjct 610858 TTAACGAAAATTTGCAT 610874 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||||| || | || | ||| || |||||||| ||||| || || |||||||| Sbjct 612244 CCTCCTCTTAGACGTAGTACAAGATGTAAAGTCGACTCCTTTTGAATGTTATAATCAGAA 612303 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | || ||| || | |||||||||| |||||| || | || ||||| | || Sbjct 612304 AGTGTACGTCCGTCTTCTAGTTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGAGGA 612363 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || ||||| || || ||| ||| || ||| ||| || || | || ||| Sbjct 612364 ATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTTTCAATTGTATCTGATGCTTCAACC 612423 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 ||||| ||||||||||| || || | || || ||||| || |||||| || Sbjct 612424 TCCAGGGTTATCGTTTTACCTGTCAATGTCTTGACGAAGATCTGCATGATT 612474 Score = 91.5 bits (100), Expect = 9e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || || | || | ||||| || || || ||||| ||||| ||||| || Sbjct 611787 ACCTCCTCTCAAACGAAGAACAAGATGCAGAGTTGATTCCTTTTGAATATTATAATCGGA 611846 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | || || || ||||||||||| || ||| || || | |||||| || | || Sbjct 611847 AAGTGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAGATCAATCTTTGCTGATCTGGTGG 611906 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || || || || || ||| ||| || ||| ||| || || | || ||| Sbjct 611907 AATTCCCTCCTTGTCCTGAATTTTTGCTTTGACATTTTCAATGGTATCAGACGCTTCAAC 611966 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| || || || ||||| |||||||||||||| ||||||||||| Sbjct 611967 CTCCAAGGTAATAGTCTTTCCAGTAAGAGTTTTTACAAAAATTTGCAT 612014 >seq2840 Length=3276 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 ||||||||||| || | ||||||||| ||||| || || || || ||||| ||||||||| Sbjct 3088 CCGCCTCTTAAACGAAGCACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCAGAC 3147 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 ||| | | || |||||||| |||||| ||| || || | |||||| |||| || Sbjct 3148 AAAGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGCTGATCCGGTGGA 3207 Query 33263 ATGCCT 33268 || ||| Sbjct 3208 ATCCCT 3213 >seq26 Length=4553502 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 ||||||||||| || | ||||||||| ||||| || || || || ||||| ||||||||| Sbjct 253246 CCGCCTCTTAAACGAAGCACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCAGAC 253187 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 ||| | | || |||||||| |||||| ||| || || | |||||| |||| || Sbjct 253186 AAAGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGCTGATCCGGTGGA 253127 Query 33263 ATGCCT 33268 || ||| Sbjct 253126 ATCCCT 253121 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 ||||||||||| || | ||||||||| ||||| || || || || ||||| ||||||||| Sbjct 264828 CCGCCTCTTAAACGAAGCACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCAGAC 264887 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 ||| | | || |||||||| |||||| ||| || || | |||||| |||| || Sbjct 264888 AAAGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGCTGATCCGGTGGA 264947 Query 33263 ATGCCT 33268 || ||| Sbjct 264948 ATCCCT 264953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318766465297668