Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq65 107 1e-18 seq139 104 2e-17 seq190 93.3 3e-14 >seq65 Length=2871674 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 || || |||||||| || || | || || ||| | || |||||||| || || || || Sbjct 612052 TCCTTCTGAATATTGTAGTC-TGAAAGTGTACGTCCGTCTTCCAATTGCTTGCCGGCGAA 612110 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||| | |||||| || | || | |||||||||||| |||||| ||| || | Sbjct 612111 GATCAATCTTTGCTGATCTGGTGGAATGCCTTCTTTATCTTGGATTTTTGCTTTAACGTT 612170 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||||||| | ||| || |||| |||||||||||||| || | |||||| || Sbjct 612171 TTCAATCGTATCTGAGGCCTCAACTTCGAGTGTAATTGTTTTACCAGTGAGAGTCTTGAC 612230 Query 44110 AAATATTTGCATG 44122 || ||||||||| Sbjct 612231 GAAAATTTGCATG 612243 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||| | | || | ||| || || ||| ||||| ||||||||||| Sbjct 610876 CCTCCTCTCAAACGAAGAACAAGATGAAGGGTTGACTCCTTTTGGATATTATAATCAGAC 610935 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| ||| ||||| || |||||||| || || || ||||||| ||||| || | || Sbjct 610936 AATGTACGATCATCTTCTAATTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGTGGA 610995 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| ||| || || || | ||| || || | | ||| || Sbjct 610996 ATGCCTTCTTTATCTTGAATCTTGGCCTTAACATTCTCAATTGTGTCAGAAGCCTCAACC 611055 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| |||||||| || | ||||| || || |||||||| Sbjct 611056 TCAAGGGTAATGGTTTTACCTGTGAGGGTCTTGACGAAAATTTGCAT 611102 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||| | | || | ||| || || || |||||||||||||||||| Sbjct 611787 ACCTCCTCTCAAACGAAGAACAAGATGCAGAGTTGATTCCTTTTGAATATTATAATCGGA 611846 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || |||| |||||||| || || ||||| ||||| | |||||| || | || Sbjct 611847 AAGTGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAGATCAATCTTTGCTGATCTGGTGG 611906 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || || || || ||||||| |||||| | ||| ||||| | || || || Sbjct 611907 AATTCCCTCCTTGTCCTGAATTTTTGCTTTGACATTTTCAATGGTATCAGACGCTTCAAC 611966 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || | ||| || ||||| |||||||| Sbjct 611967 CTCCAAGGTAATAGTCTTTCCAGTAAGAGTTTTTACAAAAATTTGCAT 612014 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| | | || || | ||||| || ||| |||||||| |||||||| Sbjct 612244 CCTCCTCTTAGACGTAGTACAAGATGTAAAGTCGACTCCTTTTGAATGTTATAATCAGAA 612303 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | ||| | || || | ||| ||||| ||||||||||| | || ||||| |||| Sbjct 612304 AGTGTACGTCCGTCTTCTAGTTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGAGGA 612363 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || ||| ||||||| ||| || | ||| ||||||| | || || Sbjct 612364 ATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTTTCAATTGTATCTGATGCTTCAACC 612423 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || |||||||| || || ||||| || || || |||||| Sbjct 612424 TCCAGGGTTATCGTTTTACCTGTCAATGTCTTGACGAAGATCTGCATG 612471 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||||||||| |||||||| | | || | || ||||||||||| || || || Sbjct 610684 TCTTTTTGAATGTTATAATCAGAAAGTGTGCGTCCGTCTTCCAATTGTTTGCCAGCGAAA 610743 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| | |||||||| | || | ||||| || || |||||| |||||| | Sbjct 610744 ATCAATCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTT 610803 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || || | | ||| || || | ||||| |||||||| || | |||||| || Sbjct 610804 TCAATTGTGTCAGAGGCCTCAACTTCAAGGGTAATAGTTTTACCCGTGAGAGTCTTAACG 610863 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 610864 AAAATTTGCAT 610874 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||| | | || | ||| || || || ||||| || |||||||| Sbjct 611103 ACCTCCTCTCAAACGCAGAACAAGATGAAGGGTTGATTCCTTTTGGATGTTATAATCCGA 611162 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || |||| || | ||||||||| ||||| ||||| | |||||| || | || Sbjct 611163 AAGTGTGCGTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGCTGATCTGGCGG 611222 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||||||| ||| || || || | ||| || || | | ||| || Sbjct 611223 AATACCTTCTTTATCCTGAATCTTGGCCTTAACATTCTCAATTGTGTCAGAAGCCTCAAC 611282 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| |||||||| || | ||||| || || |||||||| Sbjct 611283 TTCAAGGGTAATGGTTTTACCTGTGAGGGTCTTGACGAAAATTTGCAT 611330 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||| | | || | ||| || || || ||||| || |||||||| Sbjct 611331 ACCTCCTCTCAAACGCAGAACAAGATGAAGGGTTGATTCCTTTTGGATGTTATAATCCGA 611390 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || |||| || | ||||||||| ||||| ||||| | |||||| || | || Sbjct 611391 AAGTGTGCGTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGCTGATCTGGCGG 611450 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||||||| ||| || || || | ||| || || | | ||| || Sbjct 611451 AATACCTTCTTTATCCTGAATCTTGGCCTTAACATTCTCAATTGTGTCAGAAGCCTCAAC 611510 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| |||||||| || | ||||| || || |||||||| Sbjct 611511 TTCAAGGGTAATGGTTTTACCTGTGAGGGTCTTGACGAAAATTTGCAT 611558 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||| | | || | ||| || || || ||||| || ||||||||| Sbjct 611559 ACCTCCTCTCAAACGAAGAACAAGATGCAGAGTTGATTCCTTTTGGATGTTATAATCGGA 611618 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || | || ||||||||||| || || || ||||| | ||||| || | || Sbjct 611619 AAGTGTGCGTCCGTCTTCCAATTGTTTGCCGGCGAAGATCAATCTCTGCTGATCTGGCGG 611678 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||||||| ||| || || || | ||| || || | | ||| || Sbjct 611679 AATACCTTCTTTATCCTGAATCTTGGCCTTAACATTCTCAATTGTGTCAGAAGCCTCAAC 611738 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| |||||||| || | ||||| || || |||||||| Sbjct 611739 TTCAAGGGTAATGGTTTTACCTGTGAGGGTCTTGACGAAAATTTGCAT 611786 >seq139 Length=3030711 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 43932 CTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATA 43991 |||| || ||||||||||| || ||| |||| ||||| |||||||| ||||||| Sbjct 1044746 CTTTCTGGATATTATAATCTGACAAGGTACGTCCATCTTCCAACTGTTTTCCAGCAAATA 1044687 Query 43992 TCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAG 44051 | | ||||| || || | || | ||||||||||| |||||| || || | Sbjct 1044686 TAAGTCGTTGTTGATCAGGTGGAATTCCTTCTTTATCCTGAATTTTAGCCTTCACATTTT 1044627 Query 44052 CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAA 44111 ||| ||| |||| | || || || | || || |||||||| || ||||||||||||| Sbjct 1044626 CAATAGTGTCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCTGTCAAAGTCTTCACAA 1044567 Query 44112 ATATTTGCAT 44121 |||| ||||| Sbjct 1044566 ATATCTGCAT 1044557 >seq190 Length=691288 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | ||| ||||||||||| || || ||| || ||||| || || || Sbjct 260296 CCTCCTCGAAGTCTCAACACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAA 260237 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || |||||||| || || || || || ||||||||||| |||| Sbjct 260236 AGAGTTCTCCCATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGGA 260177 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| ||| |||||| || || | | | || |||| | ||| || Sbjct 260176 ATTCCTTCTTTGTCTTGAATTTTCGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTACC 260117 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCG 44125 |||| ||||| ||||| || || | || || ||||| || |||||| || Sbjct 260116 TCGAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCATGCCG 260066 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | || || |||||||| || || || ||||| ||||| ||||| Sbjct 260524 CCTCCTCGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCCGAA 260465 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | |||| || ||||| || || ||||| ||||| ||||| ||||| |||| Sbjct 260464 AGAGTTCTTCCATCTTCTAATTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGAGGA 260405 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| ||||| ||| || | | | ||||||| | || || Sbjct 260404 ATTCCTTCTTTATCTTGGATTTTAGCTTTCACATTCTCTATTGTATCTGAGGCTTCTACC 260345 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | ||||| ||||| || || | || || ||||| ||||||||| Sbjct 260344 TCAAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAAATTTGCATG 260297 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| | | ||| ||||| ||||| || || || |||||||| |||||||| Sbjct 260752 CCTCCACGGAGTCTCAACACTAAATGCAGAGTAGATTCCTTTTGAATGTTATAATCCAAC 260693 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || | | |||| || ||||| || || ||||| ||||| ||||||||||| |||| Sbjct 260692 AAAGTTCTCCCATCTTCTAATTGCTTCCCAGCAAAGATCAAACGTTGCTGGTCAGGAGGA 260633 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || ||| |||||| || || | | | ||||| | | || || Sbjct 260632 ATTCCTTCCTTGTCTTGAATTTTCGCCTTAACATTTTCGATTGTATCAGAAGCTTCTACT 260573 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | ||||| ||||| || || | || || || || ||||||||| Sbjct 260572 TCCAAGGTAATGGTTTTCCCTGTGAGTGTTTTGACGAAGATTTGCATG 260525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354765207840168