Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq190 98.7 8e-16 >seq190 Length=691288 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 |||||||| | ||||| || | ||| ||||| |||||||| |||||||| ||||| | Sbjct 256205 CCTCCTCGGAGTCTCAATACAAGATGAAGTGTTGATTCTTTCTGTATGTTATAATCTGAC 256146 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | ||| || || ||||| || || | || | | ||| || || || Sbjct 256145 AGAGTTCTTCCATCCTCTAACTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGAGGA 256086 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| |||||| |||||| | | | | || || ||| | Sbjct 256085 ATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTCTCTATTGTGTCTGAAGCTTCTACT 256026 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || |||||||| || ||||| ||||||||||| |||||||| Sbjct 256025 TCTAACGTGATGGTTTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 255979 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 |||||||| | | ||| |||||||| ||||||||||| ||||| || |||||||| Sbjct 260524 CCTCCTCGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCCGAA 260465 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||| ||||| ||||| ||| |||| | | ||||| || || Sbjct 260464 AGAGTTCTTCCATCTTCTAATTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGAGGA 260405 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || ||||| |||||| | | | | ||| | ||| Sbjct 260404 ATTCCTTCTTTATCTTGGATTTTAGCTTTCACATTCTCTATTGTATCTGAGGCTTCTACC 260345 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||||| ||||| || || | |||||||||||||||||||| Sbjct 260344 TCAAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAAATTTGCAT 260298 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| || | |||||||| ||||| || |||||||| ||||| ||||| ||||| Sbjct 260754 TTCCTCCACGGAGTCTCAACACTAAATGCAGAGTAGATTCCTTTTGAATGTTATAATCCA 260695 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 || |||| | |||||| ||||| || || ||| | || | | || || || | Sbjct 260694 ACAAAGTTCTCCCATCTTCTAATTGCTTCCCAGCAAAGATCAAACGTTGCTGGTCAGGAG 260635 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||| ||||| |||||| || || | | | | ||| || ||| Sbjct 260634 GAATTCCTTCCTTGTCTTGAATTTTCGCCTTAACATTTTCGATTGTATCAGAAGCTTCTA 260575 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| |||||||||||| || || | |||||||| || |||||||| Sbjct 260574 CTTCCAAGGTAATGGTTTTCCCTGTGAGTGTTTTGACGAAGATTTGCAT 260526 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| |||||||| ||||||||||| ||||| || || ||||| | |||| | ||| Sbjct 255279 CAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCCGAAAGAGTTCTCCCATC 255220 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||| ||||||||||| ||| |||| || | |||||||| ||| | ||||||||||| Sbjct 255219 TTCTAATTGTTTGCCAGCAAAAATCAGACGTTGTTGATCAGGGGGAATTCCTTCTTTGTC 255160 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||||||| || || | | | | || || || || | ||||| || Sbjct 255159 TTGAATTTTTGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTACCTCAAGAGTAATAGT 255100 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || || | ||||||||||| || ||||| Sbjct 255099 TTTTCCTGTGAGTGTTTTGACAAAGATCTGCAT 255067 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| |||||||| ||||||||||| ||||| || || ||||| | |||| | ||| Sbjct 255507 CAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCCGAAAGAGTTCTCCCATC 255448 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||| ||||||||||| ||| |||| || | |||||||| ||| | ||||||||||| Sbjct 255447 TTCTAATTGTTTGCCAGCAAAAATCAGACGTTGTTGATCAGGGGGAATTCCTTCTTTGTC 255388 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||||||| || || | | | | || || || || | ||||| || Sbjct 255387 TTGAATTTTTGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTACCTCAAGAGTAATAGT 255328 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || || | ||||||||||| || ||||| Sbjct 255327 TTTTCCTGTGAGTGTTTTGACAAAGATCTGCAT 255295 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| | || || || ||||| ||||||||||| ||||| ||||||||||| | Sbjct 256433 CCACCTCGGAGTCTTAAAACTAAATGGAGTGTAGATTCCTTTTGAATGTTGTAATCCAAC 256374 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||| || || || || ||| | || | | || ||||| || Sbjct 256373 AAAGTTCTTCCATCTTCTAACTGCTTCCCAGCAAAGATCAAACGTTGCTGATCAGGAGGA 256314 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| |||||| |||||| | | | | || || ||| | Sbjct 256313 ATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCTACT 256254 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || |||||||| || || | || |||||||| |||||||| Sbjct 256253 TCCAAAGTGATGGTTTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 256207 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 |||||||| | ||||| || | ||| ||||| |||||||| || ||||| ||||| | Sbjct 255977 CCTCCTCGAAGTCTCAAAACAAGATGGAGTGTTGATTCTTTCTGAATGTTATAATCTGAC 255918 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | ||| || |||||||| || || | || | | || || || || Sbjct 255917 AGAGTTCTCCCATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGGA 255858 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| |||||| |||||| | | | | || || ||| | Sbjct 255857 ATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCTATTGTGTCAGAAGCTTCTACT 255798 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || || || | |||||| |||||||| ||||| Sbjct 255797 TCCAAGGTGATGGTCTTACCTGTGAGCGTTTTAACAAAAATCTGCAT 255751 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 |||||||| | | ||| || | ||| ||||| |||||||| || ||||| || || | Sbjct 255749 CCTCCTCGGAGTCGCAATACAAGATGGAGTGTTGATTCTTTCTGAATGTTATAGTCTGAC 255690 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||| || ||||| || ||| | || | | ||| || || || Sbjct 255689 AGAGTTCTCCCATCTTCTAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 255630 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || |||||||| || ||| |||||| | | | | | || ||| | Sbjct 255629 ATTCCCTCTTTGTCTTGGATCTTTGTTTTCACGTTCTCTATTGTGCCAGAAGCTTCTACT 255570 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| |||||||| || ||||| ||||||||||| || ||||| Sbjct 255569 TCCAAGGTGATGGTTTTTCCTGTCAATGTTTTGACAAAGATCTGCAT 255523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419572544081346