Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq25 107 2e-18 >seq25 Length=3544016 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 ||||||||||| || ||||| || |||||| || ||||||||||| |||| ||||| Sbjct 2907695 CTTCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCCGGCATAAGACCTCTTTTTT 2907754 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| || ||||||||||| || |||||||| ||||| ||||| ||||| | Sbjct 2907755 TCAACCAGAAAATAGCAGCAAAACTGCCGCTGAAAAATATACCTTCCACTGCAGCAAATG 2907814 Query 13293 CTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTG 13352 | | | | |||| |||| | ||| | | |||||| ||| ||||| | | Sbjct 2907815 CAACTACACGTTCAGGGAACGTGGCACTTTCATGGTTTATCCAATTTAATGCCCACTGAG 2907874 Query 13353 CTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATA 13394 |||||| | |||| || | ||| || ||||| ||||||| Sbjct 2907875 CTTTTTTTGTAACACATGGTAAATTCTCAATTGCATTAAATA 2907916 Score = 82.4 bits (90), Expect = 7e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 ||||| ||||| || ||||| |||||||||||| || | ||||||||| || ||||| Sbjct 2908034 ATATATGTATCAATTAATAAAGAATACATTTCTGAGTGTACATTTTCCATGGCGATTTGA 2908093 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAA 13539 || ||||| || || | || |||| || || ||||| || | ||||| ||| | | Sbjct 2908094 AAGCCATAGAAGCAACGTGCTTCTGTTATTTGTACTTCTTGACT-AAATCGTTCGACGAG 2908152 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC 13578 || || || || || || ||| ||| ||||| || || Sbjct 2908153 ATTCTCATTGACAATTCCATCAGAAGCGGCAAAGAATGC 2908191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430967346054132