Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq104 125 9e-24 >seq104 Length=1444537 Score = 125 bits (138), Expect = 9e-24 Identities = 156/213 (73%), Gaps = 12/213 (6%) Strand=Plus/Minus Query 164715 TAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT-- 164772 |||| ||||||| | ||| |||||||||| || |||||| |||| ||| |||||| Sbjct 1228837 TAGTGGATTACATATAATTATTTTTGATGAAATTGATGCTATTTGTAAATCTCGTGGTAG 1228778 Query 164773 --------GATA-ATATTA-TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGA 164822 || | | | | |||| ||| | || || |||||| |||| | ||||| || Sbjct 1228777 TGTTGCTGGAAACACAGGAGTTCACGATACTGTTGTAAATCAGCTGCTCGCAAAAATTGA 1228718 Query 164823 TGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAAT 164882 |||||| ||| ||||||||||| | || | |||||||| ||| || ||| | || Sbjct 1228717 TGGTGTGGAACAACTAAATAATATTCTTGTTATTGGTATGACTAACAGAAGAGATATGAT 1228658 Query 164883 TGATGATGCTTTATTACGACCTGGTCGATTAGA 164915 |||||| |||||||||||||||||| ||||||| Sbjct 1228657 TGATGAAGCTTTATTACGACCTGGTAGATTAGA 1228625 Score = 100 bits (110), Expect = 3e-16 Identities = 211/312 (68%), Gaps = 6/312 (2%) Strand=Plus/Minus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| ||||| || |||||||| | || ||||| || ||||| | |||||| Sbjct 1229254 ATTGGGATTTTCAAAAAATGGGAATTGGCGGACTGGACAAGGAATTCAGTGCTATTTTTC 1229195 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 || ||||||| || || || |||| ||||| | | | |||| || ||||| | Sbjct 1229194 GAAGAGCATTCGCGTCACGAGTGTTTCCACCAGAAATTGTTACACAATTGGGATGTAAGC 1229135 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || | |||||||||||| | |||| || |||||| |||||||| |||||||| | Sbjct 1229134 ATGTGAAAGGAATTTTACTTTATGGTCCACCTGGTACAGGTAAAACGTTAATGGCAAGGC 1229075 Query 164573 GCATTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | | | ||||| | | || || |||||| || ||||| ||| | | | Sbjct 1229074 AGATAG-GGACTATGTTAAATGCTAGAGAGCC--TAAAATCGTCAATGGCCCTCAGATTT 1229018 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 || | |||||||| || || ||||||||| |||| | || ||| || || |||| Sbjct 1229017 TGGATAAATATGTTGGAGAAAGTGAAGCTAATATTAGGAGATTATTTGCTGATGCCGAAG 1228958 Query 164690 AAGAACAAAAGA 164701 | || | |||| Sbjct 1228957 AGGAGGAGAAGA 1228946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595850652885600