Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq8 224 5e-54 >seq8 Length=1081645 Score = 224 bits (248), Expect = 5e-54 Identities = 407/592 (69%), Gaps = 5/592 (1%) Strand=Plus/Plus Query 3550 TGCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTCGTATTTAC---ACGATTGAA 3606 |||||||||||||||||| || || | ||| || || | ||||| || | | Sbjct 233650 TGCTGTAAAAATGGCAAATATGGACAAAGCATGTAACTTTATGTTTACTAAACCAGAGGG 233709 Query 3607 TGATGGATCAAATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAG 3666 | ||| || ||| || | || ||||| || || || |||||||| ||||||||||| Sbjct 233710 TTTAGGAAAGAACGAACTGCTGTACTTTGCGGATGTTTGTGCTGGTCCGGGTGGTTTCAG 233769 Query 3667 TGAATATATGTTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGa 3726 ||||||| | | ||||||||||||||| || ||||| | ||| | || || | Sbjct 233770 TGAATATGTTCTCTGGAGAAAGAAATGGCATGCTAAAGGATTTGGCCTTACCTTGAAGAA 233829 Query 3727 aaaaaaTGATTTTCAACTGAACAGA-TTTTACGATAACTTTTCGGAAACTTTACACCCGT 3785 ||||||| || ||| | | | || ||||| | | || ||||| || ||||| | Sbjct 233830 TGAAAATGACTT-CAAGTTATCTGACTTTTATGCTGGGCCTTGCGAAACATTCCACCCAT 233888 Query 3786 ATTATGGTCCGCTTAACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTG 3845 | ||||| ||| | ||||| || | | || || ||||| ||| ||| | Sbjct 233889 ACTATGGACCGAAGGATAATGGTGATGTTTTTGATCCAATTAATCAAGAAGCTTTCAAAG 233948 Query 3846 AAATGATTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGT 3905 | | || ||| || |||| | || ||||| |||||||| |||||| |||| || || | Sbjct 233949 ATCTTATAATGCAACATACTGGTGGTAAAGGAGTACATTTCATGATGTCTGATGGAGGAT 234008 Query 3906 TCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTC 3965 | || || | |||||||||||||| || ||||| | || ||| | | ||| | |||| Sbjct 234009 TTTCAGTAGGAGGTCAAGAAAATATACAGGAAATTCTTTCAAAACAATTATATCTTTGTC 234068 Query 3966 AATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCG 4025 | ||||| | ||||||||||| || || ||||||| ||| | || || || | Sbjct 234069 AGTGTTTGGTGGCATTGATGATTGTAAGAGAGAAAGGTCATTTTGTGACAAAGTTATTTG 234128 Query 4026 ATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTA 4085 || | || || || |||||||| || ||||| || || |||||| | | ||| | Sbjct 234129 ATCTTTTCACTCCCTTTAGTGCCGGCTTAGTTTACTTAATGTATCGTTGCTTTGAAAAAG 234188 Query 4086 TTTGTATTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTT 4137 ||||||||||||| ||| | || || |||| || ||||| ||| | ||||| Sbjct 234189 TTTGTATTTTCAAGCCAAACTCTTCCAGACCAGCAAATTCAGAACGCTATTT 234240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276543940155598