Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq59 178 2e-40 seq108 145 1e-30 >seq59 Length=4956068 Score = 178 bits (196), Expect = 2e-40 Identities = 193/255 (76%), Gaps = 1/255 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||| |||||||| ||||||||||||||||| || ||||| |||||||||||||| Sbjct 4519130 CGTGATAATATCCAAGGTATCACCAAGCCAGCTATACGCCGTCTTGCTCGTCGTGGTGGT 4519189 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| | ||||||||| |||||||||| | || | ||| |||| | ||| | Sbjct 4519190 GTGAAGCGTATTTCTGGATTGATCTATGAAGAAACGCGAGGTGTACTGAAAGTTTTCTTG 4519249 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | |||||||| ||||| | || |||||||| ||||| | ||||| || || Sbjct 4519250 GAAAACGTTATCCGAGATGCGGTAACGTACACCGAGCATGCTAAGAGAAAGACCGTGACG 4519309 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| ||||||| || |||| || ||||| | | | ||||||||||| || Sbjct 4519310 GCTATGGATGTCGTCTACGCTCTGAAGCGCCAAGGAAGAACCCTCTATGGTTTTGGTGGT 4519369 Query 16697 TAATCT-TCTAATCA 16710 |||| | | |||||| Sbjct 4519370 TAATTTGTGTAATCA 4519384 >seq108 Length=1549515 Score = 145 bits (160), Expect = 1e-30 Identities = 182/247 (74%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || || || || ||||| || ||||| ||||||||||||| Sbjct 646860 CTTCGTGATAACATCCAGGGTATTACGAAACCAGCAATTCGTCGCTTGGCTCGTCGTGGC 646801 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| | ||||| || | || ||||| | ||||| || ||||| | ||| Sbjct 646800 GGTGTTAAGCGCATATCTGGTTTAATTTACGAAGAAACTCGTGGCGTCTTGAAAGTTTTC 646741 Query 16574 CTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | | || || | ||| || || || || || ||||| |||||||| || ||||| Sbjct 646740 TTAGAAAATGTCATTCGTGACGCAGTTACA-TACACGGAGCATGCTAAACGAAAAACTGT 646682 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| |||| || || |||| | ||||| |||| ||||||||||||| Sbjct 646681 AACGGCTATGGATGTCGTATACGCTCTGAAGAGGCAAGGACGTACTCTTTATGGTTTTGG 646622 Query 16693 AAGTTAA 16699 | ||||| Sbjct 646621 AGGTTAA 646615 Score = 105 bits (116), Expect = 1e-18 Identities = 173/247 (70%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 |||||||| || |||||||| |||||||||||||| || | |||| | | ||||| Sbjct 652498 CGAGATAATATTCAAGGAATTACCAAGCCAGCTATTCGAAGATTGGCAAGAAGAGGTGGT 652439 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || | || || || | || || |||| |||| ||| ||||| | || || Sbjct 652438 GTTAAAAGAATCAGCGGCTTAATATACGAGGAGACACGTGGTGTCTTGAAAGTATTTCTT 652379 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | ||||| | || || | ||||| |||||||| ||| | || ||||| || Sbjct 652378 GAAAATGTTATACGAGACGCAGTTACGTATACTGAGCACGCCAAAAGGAAAACTGTAACT 652319 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATT-TATGGTTTTGGAAG 16695 | |||||| | || || || ||||||||||||||| | || ||| || ||||| || | Sbjct 652318 GCTATGGATGTAGTTTACGCTTTGAAACGTCAAGGCAG-AACATTGTACGGTTTCGGTGG 652260 Query 16696 TTAATCT 16702 |||| || Sbjct 652259 TTAAGCT 652253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072579596138