Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq25 100 3e-16 >seq25 Length=3544016 Score = 100 bits (110), Expect = 3e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 |||||| ||||||| | || ||| | || || | ||| ||| | |||| ||| Sbjct 2907055 TTAAAATTCAGCATTAACTGTAAAATTGCTCTCGACTCTATTTTGCATTACTCCCCATTT 2907114 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||||| || | || ||||||||||||||||||| || |||||||| || ||| || Sbjct 2907115 CTGATATTCTCCCACCTTTTTTTCGAAAAAATTTGTTTTACCTTCCAAAGAGATATGCTC 2907174 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATAT 21279 |||||||||||| ||||||||||| || |||| Sbjct 2907175 CATAAAATCAAACGGATTTTCAGACATATATAT 2907207 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557 ||||||| ||| || | |||||| |||||| | || ||||| | ||||| |||| Sbjct 2907695 CTTCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCCGGCATAAGACCTCTTTTTT 2907754 Query 21558 TTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAA 21615 | ||||| || || | ||||| ||| ||||||| | || || || || |||||||| Sbjct 2907755 TCAACCAGAAAATAGCAGCAAAACTGCCGCTGAAAA--ATATACCTTCCACTGCAGCAAA 2907812 Query 21616 TGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTT 21675 |||||||| |||||| | | || | || || |||||| ||| |||||| | Sbjct 2907813 TGCAACTACACGTTCAGGGAACGTGGCACTTTCATGGTTTATCCAATTTAATGCCCACTG 2907872 Query 21676 TGCCTTTTCTTTAATACA 21693 || |||| | ||| ||| Sbjct 2907873 AGCTTTTTTTGTAACACA 2907890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531881744653840