Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq64 147 3e-30 seq25 98.7 1e-15 >seq64 Length=2955609 Score = 147 bits (162), Expect = 3e-30 Identities = 201/276 (73%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 ||| || || ||| || ||| ||||| || || || || |||| ||| | | ||| Sbjct 1698023 CTGTATAGAACCATTATTTGCTATAATTTCGTTTTTCATGTCCTCATCCCAAAGATCTCT 1697964 Query 62303 CTCGGTTAAAACTC-TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTC 62361 || |||| | ||| ||| || || || || || | ||| ||||||||||||| |||| Sbjct 1697963 TTCAGTTAGATCTCGTAATAAG-TGAGGGTTTACAATTTGGAATTCTCCAGACAGAACTC 1697905 Query 62362 TCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAG 62421 | | | |||||||| |||||||| ||||| | || ||||||||||| |||||||| | Sbjct 1697904 TTCTTGCATAAATATTGCTGGTATATGGTTCTATGGATTCATTATTTCCTAAAATTTGTG 1697845 Query 62422 CAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG- 62480 |||| ||||| || ||||||||||| | | |||| |||||||| || ||||| | Sbjct 1697844 CAGTAGATGCTGTTGGCATAGGTGCAATTAGTAAAGAATTTCTAATTCC--ATGTTTAGC 1697787 Query 62481 -ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62515 ||||| ||||| | | | ||||||||| | ||| Sbjct 1697786 AATTTTTTCTTTCAAAATTGTCCAATTCCATAAATC 1697751 Score = 140 bits (154), Expect = 4e-28 Identities = 222/314 (71%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 63282 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63341 || || ||||| ||||||||||| | || | | ||||| | |||||| |||||||| Sbjct 1696663 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCCAAA 1696604 Query 63342 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63401 ||||| || | |||| || | ||| |||||||| ||||| | || | ||| |||||| Sbjct 1696603 TATATAGCAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATACCGAGCTGTGTTA 1696544 Query 63402 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63461 || || ||||| | ||||||||| | ||| || |||| |||| ||||| || ||| | Sbjct 1696543 TTGTATACTCTGATCATTGGAATTAAACCATTAGATACACCAAGTGTACC--AGCTATTG 1696486 Query 63462 --CTTCCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63518 | || | || |||||| | || | | || || || || || || |||| Sbjct 1696485 GTGTACCTTTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTACTA 1696427 Query 63519 ATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTA 63578 || | ||| |||| |||||| || ||||| || || || ||||||||||| |||| | Sbjct 1696426 ATAAGTGCACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCATCACTCATTGTT 1696367 Query 63579 AGTAGAAAACAGCT 63592 |||| ||| || || Sbjct 1696366 AGTAAAAAGCAACT 1696353 Score = 100 bits (110), Expect = 4e-16 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||| || || || ||||||| || | |||||| |||||| |||||||| || || Sbjct 1696890 TTCAAATTCATCGCCCCAAATATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGA 1696831 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63255 ||| | || | ||| |||||||||||||| |||||||| ||||| ||||| ||| | Sbjct 1696830 CCATACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAGAGC-ATAGA 1696772 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289 ||| ||||| | ||||||||| || || ||||| Sbjct 1696771 ATAATTCTCTCGCTCTATGTTCTTCCTTACCTGT 1696738 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 62571 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62630 ||| |||| || || |||| ||||| || |||| |||||||| || || ||||| ||| Sbjct 1697615 CCTTCATAAGTTTCATATGTTCCTTTCTCTGCAGCAAGTTCACAGCTAGCTTCTAAGGCA 1697556 Query 62631 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 62690 |||||||| | ||||| || || | |||| || | |||||||||| || |||||| Sbjct 1697555 CCGTAATATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCCTCACTTTCAAAT 1697496 Query 62691 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62740 ||||| | | || |||||| || || | || |||| ||||| || Sbjct 1697495 GGATATCGCATTAAAAGAAACGCATCTGCGAGACCCTGAATTCCAATCCC 1697446 Score = 82.4 bits (90), Expect = 1e-10 Identities = 177/265 (67%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 ||||||||||| || || ||||| | ||| ||| | || ||||| || || ||||| Sbjct 1696286 CTAGACATTTGCTGTCGTCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGAGTAAAA 1696227 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63710 | ||| || | | ||||| || || ||| || || ||||| ||| || Sbjct 1696226 TAACGTTCTGATAAAAAGTTGTATGTTTCTATAACTTTATCAATATCTTCACCATGGATA 1696167 Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63770 | ||||| || | ||||| ||| || || ||||||||||| | || | ||| || Sbjct 1696166 GCAACTGCAACTCTCATTAGCATATGTTGTGGTCTTTCAACAACTTTCCCATGTATCTTT 1696107 Query 63771 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63830 || || || ||| || | || ||||||||||| || || || ||| |||| || Sbjct 1696106 AATAAATAACTTTTCTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAATCTCTATCA 1696047 Query 63831 TAAATAATAACCGAGTTGAGTTTAT 63855 ||||| || | || || | ||||| Sbjct 1696046 TAAATTATTGCGGAATTTAATTTAT 1696022 >seq25 Length=3544016 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 33100 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATAT 33159 ||| ||| |||| | | || |||||| || || || || || || ||||| |||||| Sbjct 2907275 TTACAAACCTTTTCACAGCCTAATTCAATAAGTAACCTGTCAGCAACAAATTCGATATAT 2907334 Query 33160 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAAT 33219 ||| | || ||||||||||||||| | || ||| || | || | || | |||| Sbjct 2907335 TGACACATAAGTTTACAATTCATTCCTATCATTTCAACAGGTAAGGCATCCGTTAAAAAT 2907394 Query 33220 TCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGA 33279 ||||||||||| || |||||| | ||||| ||| | || ||| | ||| Sbjct 2907395 TCTTGTTCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGTTCGGAAGATGGTTTT 2907454 Query 33280 TGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33328 || | | ||||| ||||| |||||||||||||| || || || |||| Sbjct 2907455 TGTATAATGTGTTTGAACATTAAACATGCGAAATCACAATGTAGTCCCT 2907503 Score = 96.9 bits (106), Expect = 4e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||| |||||| ||| || ||||| ||||| ||||||||||||||| ||||| ||||| Sbjct 2907100 CATTACTCCCCATTTCTGATATTCTCCCACCTTTTTTTCGAAAAAATTTGTTTTACCTTC 2907159 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATT 33092 ||| || |||| ||||| |||||||||||||| Sbjct 2907160 CAAAGAGATATGCTCCATAAAATCAAACGGATT 2907192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622924882916560