Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq190 111 2e-19 seq65 98.7 1e-15 >seq190 Length=691288 Score = 111 bits (122), Expect = 2e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| |||||||| || |||||| | |||||| | ||| ||||| | Sbjct 255523 ATGCAGATCTTTGTCAAAACATTGACAGGAAAAACCATCACCTTGGAAGTAGAAGCTTCT 255582 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 | ||| || ||| | || ||| |||||| |||||||| || || ||||| || || Sbjct 255583 GGCACAATAGAGAACGTGAAAACAAAGATCCAAGACAAAGAGGGAATTCCTCCAGACCAG 255642 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC--GTCAGCGACTATA 26946 || | | || | | || ||||| | ||||||| |||| ||||| |||||| Sbjct 255643 CAGCGTTTGATCTTTGCTGGTAAACAGTTAGAAGATGGGAGAACTCTGTCAG--ACTATA 255700 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||| |||||||| || ||||||| || || |||| ||||||| Sbjct 255701 ACATTCAGAAAGAATCAACACTCCATCTTGTATTGCGACTCCGAGGAGG 255749 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | || || || | |||||| | ||| ||||| | Sbjct 255751 ATGCAGATTTTTGTTAAAACGCTCACAGGTAAGACCATCACCTTGGAAGTAGAAGCTTCT 255810 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || ||| || ||| ||||||||||| || ||||| || || Sbjct 255811 GACACAATAGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATTCCTCCTGACCAG 255870 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ACGTCAGCGACTATA 26946 ||| | | || | || || |||||| | || |||| |||| |||| || |||| Sbjct 255871 CAACGTTTAATCTTCGCTGGTAAACAATTAGAGGATGGGAGAACTCTGTCA--GATTATA 255928 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||| |||||||| || ||||||| || |||||||| ||||||| Sbjct 255929 ACATTCAGAAAGAATCAACACTCCATCTTGTTTTGAGACTTCGAGGAGG 255977 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| |||||||| || |||||| | ||||| | ||| ||||| | Sbjct 255979 ATGCAAATCTTTGTCAAAACATTGACAGGAAAAACCATCACGTTAGAAGTAGAAGCTTCA 256038 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | || ||| || ||| ||||||||||| || ||||| || || Sbjct 256039 GACACAATAGAGAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATTCCTCCAGACCAG 256098 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ACGTCAGCGACTATA 26946 || | | || | || || ||||| | || |||| |||| |||| || |||| Sbjct 256099 CAGCGTTTGATCTTCGCTGGTAAACAGTTAGAGGATGGAAGAACTCTGTCA--GATTATA 256156 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| || |||||||| || | ||||| || ||||||| ||||||| Sbjct 256157 ACATACAGAAAGAATCAACACTTCATCTTGTATTGAGACTCCGAGGAGG 256205 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| |||||| | || |||||| | || || | || |||| | Sbjct 255067 ATGCAGATCTTTGTCAAAACACTCACAGGAAAAACTATTACTCTTGAGGTAGAGGCTTCA 255126 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | || || ||| ||| ||||||||||| || || || |||||| Sbjct 255127 GACACAATAGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGAATTCCCCCTGATCAA 255186 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || |||| | ||||||||| | ||||||| |||| | || ||||| Sbjct 255187 CAACGTCTGATTTTTGCTGGCAAACAATTAGAAGATGGGAGAACTCTTTCGGATTATAAT 255246 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| |||||||| ||||| |||| || ||||| | || || Sbjct 255247 ATCCAAAAGGAATCTACACTCCATTTGGTATTGCGACTTCGTGGCGG 255293 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| |||||| | || |||||| | || || | || |||| | Sbjct 255295 ATGCAGATCTTTGTCAAAACACTCACAGGAAAAACTATTACTCTTGAGGTAGAGGCTTCA 255354 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | || || ||| ||| ||||||||||| || || || |||||| Sbjct 255355 GACACAATAGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGAATTCCCCCTGATCAA 255414 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || |||| | ||||||||| | ||||||| |||| | || ||||| Sbjct 255415 CAACGTCTGATTTTTGCTGGCAAACAATTAGAAGATGGGAGAACTCTTTCGGATTATAAT 255474 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| |||||||| ||||| |||| || ||||| | || || Sbjct 255475 ATCCAAAAGGAATCTACACTCCATTTGGTATTGCGACTTCGTGGCGG 255521 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| |||||| | || |||||| | || || |||| |||| | Sbjct 260070 ATGCAGATCTTTGTCAAAACACTCACAGGAAAAACTATTACTCTCGAGGTAGAGGCTTCA 260129 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | || || || ||| ||||||||||| || ||||| || || Sbjct 260130 GACACAATAGAGAATGTTAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCTGACCAG 260189 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | || || |||||| | || |||| |||| | ||||| ||| Sbjct 260190 CAACGTTTAATCTTCGCTGGTAAACAATTAGAGGATGGGAGAACTCTTTCGGACTACAAC 260249 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || |||||| ||||| |||| |||||||| ||||||| Sbjct 260250 ATTCAGAAGGAGTCTACTCTCCATTTGGTGTTGAGACTTCGAGGAGG 260296 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || ||| | || |||||| | ||||| | ||| ||||| | Sbjct 256207 ATGCAAATCTTTGTCAAGACACTCACAGGAAAAACCATCACTTTGGAAGTAGAAGCTTCT 256266 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || ||| || ||| ||||||||||| || ||||| ||||| Sbjct 256267 GACACAATAGAAAACGTGAAAGCTAAAATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 256326 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | | || || || | ||||||| |||| | || || ||| Sbjct 256327 CAACGTTTGATCTTTGCTGGGAAGCAGTTAGAAGATGGAAGAACTTTGTTGGATTACAAC 256386 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| |||||||| ||||| | || | ||||| |||| || Sbjct 256387 ATTCAAAAGGAATCTACACTCCATTTAGTTTTAAGACTCCGAGGTGG 256433 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || |||||| | || || ||| | || ||| | ||| ||||| | Sbjct 260526 ATGCAAATCTTCGTCAAAACACTCACAGGGAAAACCATTACCTTGGAAGTAGAAGCTTCT 260585 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || ||||| | || || || ||| ||||| ||||| || ||||| || || Sbjct 260586 GATACAATCGAAAATGTTAAGGCGAAAATTCAAGACAAGGAAGGAATTCCTCCTGACCAG 260645 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | | || || ||| | ||||||| |||| | || |||||| Sbjct 260646 CAACGTTTGATCTTTGCTGGGAAGCAATTAGAAGATGGGAGAACTTTGTTGGATTATAAC 260705 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||| ||||||||| | ||| | || ||||||| | ||||||| Sbjct 260706 ATTCAAAAGGAATCTACTCTGCATTTAGTGTTGAGACTCCGTGGAGGAA 260754 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || ||||| |||||| | || || | ||| | ||| | Sbjct 254839 ATGCAGATCTTTGTTAAGACCTTAACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 254898 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || ||| |||||| |||||||| || || ||||| || || Sbjct 254899 GACACAATAGAAAATGTGAAAGCAAAGATCCAAGACAAAGAGGGAATTCCTCCAGACCAG 254958 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | |||| | || |||||| | ||||||| |||| || || || || Sbjct 254959 CAGCGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTCTCAGATTACAAT 255018 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| |||||||||||| | || |||| || ||||| | || || Sbjct 255019 ATTCAGAAAGAATCTACTCTTCACTTGGTATTGCGACTTCGTGGCGG 255065 >seq65 Length=2871674 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||||||||| | |||||||| | || ||| | || | ||| | Sbjct 612014 ATGCAAATTTTTGTAAAAACTCTTACTGGAAAGACTATTACCTTGGAGGTTGAAGCGTCT 611955 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | |||||| ||| ||| ||||| || || || || || ||||| Sbjct 611954 GATACCATTGAAAATGTCAAAGCAAAAATTCAGGACAAGGAGGGAATTCCACCAGATCAG 611895 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | || | | |||||| ||| | ||||||| | | | ||| ||||| Sbjct 611894 CAAAGATTGATCTTTGCCGGCAAGCAATTGGAAGATGGACGCACACTTTCCGATTATAAT 611835 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| ||||| ||| | ||||| || || | | |||||||| Sbjct 611834 ATTCAAAAGGAATCAACTCTGCATCTTGTTCTTCGTTTGAGAGGAGG 611788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478645251919520