Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq141 93.3 1e-13 >seq141 Length=486598 Score = 93.3 bits (102), Expect = 1e-13 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 |||||| | || || ||||| ||| | ||||||||| | | || || | || ||| Sbjct 106298 TTTCCATTACTAACTACAAAACGAGTGTTTTGGAAGGGTGTGCTGGAGGAGTTGCTATGG 106357 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 ||||| | || ||||| || || ||| | || | ||| ||||| | || |||||| Sbjct 106358 TTTATCAGAGGTTCAACAAACGCCAAGGAATTGGCCGAAAAGAATGTTCACATATGGGAT 106417 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTC-GACAACGAAGAAGGTGA 111493 | || | || ||| |||| | |||| ||| ||| | |||| || ||||| || Sbjct 106418 GCGAACAGCTCGCGTAACTTCTTGAATTCCTCTGG-CTTCACAGACAGAGAGGAAGGAGA 106476 Query 111494 TCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCA 111553 | | ||||| || || || ||||| ||| | || ||||||||||| |||||| ||||| Sbjct 106477 TTTGGGACCTGTCTATGGTTTTCAGTGGAGACATTTTGGTGCAGAATACAAAGATATGCA 106536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303305740041212