Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq190 116 3e-21 seq65 102 8e-17 >seq190 Length=691288 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 || ||| ||||| | || |||||||| ||||||||||| || | || | | || Sbjct 260282 CAACACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTTCTCCCATC 260223 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||||| || || || ||| |||||||||| |||||||| ||||| |||||||||||||| Sbjct 260222 CTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGGAATTCCTTCTTTGTC 260163 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 |||||| ||| | | ||| | || || | | ||| | |||| |||| || Sbjct 260162 TTGAATTTTCGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTACCTCGAGAGTAATAGT 260103 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| || || || ||||| || || ||||||||| Sbjct 260102 TTTTCCTGTGAGTGTTTTGACAAAGATCTGCATG 260069 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 || ||||||||| | || || |||||||||||||| ||||| || || | | || Sbjct 260738 CAACACTAAATGCAGAGTAGATTCCTTTTGAATGTTATAATCCAACAAAGTTCTCCCATC 260679 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 |||| ||||| || || |||| ||||| |||||||| ||||| |||||||| ||||| Sbjct 260678 TTCTAATTGCTTCCCAGCAAAGATCAAACGTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 260619 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 |||||| ||| | | || | ||||| | | || | || | ||||| ||| Sbjct 260618 TTGAATTTTCGCCTTAACATTTTCGATTGTATCAGAAGCTTCTACTTCCAAGGTAATGGT 260559 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 ||| || || || ||||| ||||| || |||||| || Sbjct 260558 TTTCCCTGTGAGTGTTTTGACGAAGATTTGCATGCCT 260522 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || || || |||||||| ||||| || || | | ||||||| || || || Sbjct 255947 GTTGATTCTTTCTGAATGTTATAATCTGACAGAGTTCTCCCATCCTCTAATTGTTTACCA 255888 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC-TT 131156 ||| |||||||||| |||||||| ||||| |||||||||||||| ||| ||| || || Sbjct 255887 GCGAAGATTAAACGTTGCTGGTCAGGAGGAATTCCTTCTTTGTC-TTGAATTTTAGCTTT 255829 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | || | || || | | || | || | ||| | ||| ||||| || || || Sbjct 255828 CACATTTTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTGATGGTCTTACCTGTGAGCGT 255769 Query 131217 TTTTACGAAAATCTGCAT 131234 ||| || ||||||||||| Sbjct 255768 TTTAACAAAAATCTGCAT 255751 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/131 (76%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCT 131085 |||||||| | || || |||||||||||||||||||| || || | || ||| Sbjct 256415 ACTAAATGGAGTGTAGATTCCTTTTGAATGTTGTAATCCAACAAAGTTCTTCCATCTTCT 256356 Query 131086 AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTG 131145 | |||||| || || |||| ||||| ||||| || ||||| |||||||||||||| || Sbjct 256355 AACTGCTTCCCAGCAAAGATCAAACGTTGCTGATCAGGAGGAATTCCTTCTTTGTC-TTG 256297 Query 131146 ATTTTCTGCTT 131156 | ||| |||| Sbjct 256296 AATTTTAGCTT 256286 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | |||| || ||||| | || || |||||||| || |||||||| Sbjct 260525 GCCTCCTCGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCCGA 260466 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || |||| |||||||| || | || ||||| || ||||| ||||| Sbjct 260465 AAGAGTTCTTCCATCTTCTAATTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGAGG 260406 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||||||| || |||||| || | | ||| | ||||| | || || | Sbjct 260405 AATTCCTTCTTTATCTTGGATTTTAGCTTTCACATTCTCTATTGTATCTGAGGCTTCTAC 260346 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | |||| ||||| || || || ||||| || ||||| |||||| || Sbjct 260345 CTCAAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAAATTTGCATGCCT 260294 >seq65 Length=2871674 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||||| || ||||||||||| ||||| Sbjct 610648 CCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATGTTATAATCAGAA 610707 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || | || ||||| ||| | || || | ||||||||| || || Sbjct 610708 AGTGTGCGTCCGTCTTCCAATTGTTTGCCAGCGAAAATCAATCTCTGCTGGTCTGGGGGA 610767 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| ||||| ||| ||| || |||| | || | || || | || ||| | Sbjct 610768 ATTCCTTCCTTGTC-CTGAATTTTGGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAAC 610826 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| |||||||| || ||||| || |||||||| ||||| Sbjct 610827 TTCAAGGGTAATAGTTTTACCCGTGAGAGTCTTAACGAAAATTTGCAT 610874 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || | ||||| |||||||||||||||||||| ||||| | || || Sbjct 612255 ACGTAGTACAAGATGTAAAGTCGACTCCTTTTGAATGTTATAATCAGAAAGTGTACGTCC 612314 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 ||| ||||| ||||| || || | || || | ||| ||||| ||||| |||||||| || Sbjct 612315 GTCTTCTAGTTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGAGGAATTCCTTCCTT 612374 Query 131139 GTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAA 131197 ||| ||| ||| ||| || | | || | ||||| | | || | || | ||| | Sbjct 612375 GTC-TTGAATTTTTGCTTTCACGTTTTCAATTGTATCTGATGCTTCAACCTCCAGGGTTA 612433 Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||||||| || | || || ||||| |||||||||| Sbjct 612434 TCGTTTTACCTGTCAATGTCTTGACGAAGATCTGCATGA 612472 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | |||||| || || | ||| | ||| ||||||||||| || || ||||| | Sbjct 610876 CCTCCTCTCAAACGAAGAACAAGATGAAGGGTTGACTCCTTTTGGATATTATAATCAGAC 610935 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||| || ||||| ||| |||| || | |||||| || || || Sbjct 610936 AATGTACGATCATCTTCTAATTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGTGGA 610995 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || || || ||| | | ||| | || || | | ||| | Sbjct 610996 ATGCCTTCTTTATCTTGAATCTTGGCCTTAACATTCTCAATTGTGTCAGAAGCCTCAACC 611055 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||||||| || || || || |||||||| ||||| Sbjct 611056 TCAAGGGTAATGGTTTTACCTGTGAGGGTCTTGACGAAAATTTGCAT 611102 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | |||||| || || | ||| | || || ||||||||||| || |||||| Sbjct 611788 CCTCCTCTCAAACGAAGAACAAGATGCAGAGTTGATTCCTTTTGAATATTATAATCGGAA 611847 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | |||||||| || |||| || | ||||| || || || Sbjct 611848 AGTGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAGATCAATCTTTGCTGATCTGGTGGA 611907 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| || ||||| ||| ||| ||| |||| | || | ||||| | | || | Sbjct 611908 ATTCCCTCCTTGTC-CTGAATTTTTGCTTTGACATTTTCAATGGTATCAGACGCTTCAAC 611966 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || || || || ||||||||||| ||||| ||||| Sbjct 611967 CTCCAAGGTAATAGTCTTTCCAGTAAGAGTTTTTACAAAAATTTGCAT 612014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471995890141440