Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq190 98.7 8e-16 >seq190 Length=691288 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || |||| |||| ||| || || |||||||| || ||||||||||| | Sbjct 260296 CCTCCTCGAAGTCTCAACACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAA 260237 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| |||||||| || || | || | || || ||||| ||| Sbjct 260236 AGAGTTCTCCCATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGGA 260177 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || |||||||| ||||| | ||| || | | | ||||| | ||| Sbjct 260176 ATTCCTTCTTTGTCTTGAATTTTCGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTACC 260117 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | || || |||||||| || || ||||||||||| |||||||| Sbjct 260116 TCGAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCAT 260070 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || |||| || | ||| || || || || || || ||||| || || | | Sbjct 255977 CCTCCTCGAAGTCTCAAAACAAGATGGAGTGTTGATTCTTTCTGAATGTTATAATCTGAC 255918 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| |||||||| || || | || | || || ||||| ||| Sbjct 255917 AGAGTTCTCCCATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGGA 255858 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| ||||| ||| ||||| | | | ||||| | || Sbjct 255857 ATTCCTTCTTTGTCTTGAATTTTAGCT--TTCACATTTTCTATTGTGTCAGAAGCTTCTA 255800 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || || || |||||||| |||||||||||||| Sbjct 255799 CTTCCAAGGTGATGGTCTTACCTGTGAGCGTTTTAACAAAAATCTGCAT 255751 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || |||| ||| | ||| || || || || || |||||||| || || | | Sbjct 256205 CCTCCTCGGAGTCTCAATACAAGATGAAGTGTTGATTCTTTCTGTATGTTATAATCTGAC 256146 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| || ||||| || || | || | ||||| ||||| ||| Sbjct 256145 AGAGTTCTTCCATCCTCTAACTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGAGGA 256086 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| ||||| ||| ||||| | | | ||||| | || Sbjct 256085 ATTCCTTCTTTGTCTTGAATTTTAGCT--TTCACATTCTCTATTGTGTCTGAAGCTTCTA 256028 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||||||||||| |||| ||||||||||| || ||||| Sbjct 256027 CTTCTAACGTGATGGTTTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 255979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405073850529340