Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq64 147 3e-30 seq25 118 1e-21 >seq64 Length=2955609 Score = 147 bits (162), Expect = 3e-30 Identities = 201/276 (73%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 62098 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62157 ||| || || ||| || ||| ||||| || || || || |||| ||| | | ||| Sbjct 1698023 CTGTATAGAACCATTATTTGCTATAATTTCGTTTTTCATGTCCTCATCCCAAAGATCTCT 1697964 Query 62158 CTCGGTTAAAACTC-TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTC 62216 || |||| | ||| ||| || || || || || | ||| ||||||||||||| |||| Sbjct 1697963 TTCAGTTAGATCTCGTAATAAG-TGAGGGTTTACAATTTGGAATTCTCCAGACAGAACTC 1697905 Query 62217 TCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAG 62276 | | | |||||||| |||||||| ||||| | || ||||||||||| |||||||| | Sbjct 1697904 TTCTTGCATAAATATTGCTGGTATATGGTTCTATGGATTCATTATTTCCTAAAATTTGTG 1697845 Query 62277 CAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG- 62335 |||| ||||| || ||||||||||| | | |||| |||||||| || ||||| | Sbjct 1697844 CAGTAGATGCTGTTGGCATAGGTGCAATTAGTAAAGAATTTCTAATTCC--ATGTTTAGC 1697787 Query 62336 -ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62370 ||||| ||||| | | | ||||||||| | ||| Sbjct 1697786 AATTTTTTCTTTCAAAATTGTCCAATTCCATAAATC 1697751 Score = 134 bits (148), Expect = 2e-26 Identities = 221/314 (70%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 63137 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63196 || || ||||| ||||||||||| | || | | ||||| | |||||| |||||||| Sbjct 1696663 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCCAAA 1696604 Query 63197 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63256 ||||| || | |||| || | ||| |||||||| ||||| | || | ||| |||||| Sbjct 1696603 TATATAGCAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATACCGAGCTGTGTTA 1696544 Query 63257 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAG 63316 || || ||||| | ||||||||| | |||||| ||| |||| || || || ||| | Sbjct 1696543 TTGTATACTCTGATCATTGGAATTAAACCATTAGATACACCAAGTGTACC--AGCTATTG 1696486 Query 63317 --CTTCCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63373 | || | || |||||| | || | | || || || || || || |||| Sbjct 1696485 GTGTACCTTTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTACTA 1696427 Query 63374 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 63433 || | ||| |||| |||||| |||||||| || || || || |||||||| |||| | Sbjct 1696426 ATAAGTGCACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCATCACTCATTGTT 1696367 Query 63434 AGTAGAAAACAGCT 63447 |||| ||| || || Sbjct 1696366 AGTAAAAAGCAACT 1696353 Score = 104 bits (114), Expect = 3e-17 Identities = 117/154 (76%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||| || || || ||||||| || || |||||| |||||| |||||||| || || Sbjct 1696890 TTCAAATTCATCGCCCCAAATATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGA 1696831 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63110 ||| | || | ||| |||||||||||||| |||||||| ||||| ||||| ||| | Sbjct 1696830 CCATACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAGAGC-ATAGA 1696772 Query 63111 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63144 ||| ||||| | ||||||||| || || ||||| Sbjct 1696771 ATAATTCTCTCGCTCTATGTTCTTCCTTACCTGT 1696738 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485 ||| |||| || || |||| ||||| || |||| |||||||| || || ||||| ||| Sbjct 1697615 CCTTCATAAGTTTCATATGTTCCTTTCTCTGCAGCAAGTTCACAGCTAGCTTCTAAGGCA 1697556 Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545 |||||||| | ||||| || || | |||| || | ||| |||||| || |||||| Sbjct 1697555 CCGTAATATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCCTCACTTTCAAAT 1697496 Query 62546 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 62595 ||||| | | || |||||| ||||| | || |||| ||||| || Sbjct 1697495 GGATATCGCATTAAAAGAAACGCATCTGCGAGACCCTGAATTCCAATCCC 1697446 Score = 86.0 bits (94), Expect = 8e-12 Identities = 178/265 (67%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||||||||| || || ||||| | ||| ||| | || ||||| || |||||||| Sbjct 1696286 CTAGACATTTGCTGTCGTCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGAGTAAAA 1696227 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 | ||| || | | ||||| || || ||| || || ||||| ||| || Sbjct 1696226 TAACGTTCTGATAAAAAGTTGTATGTTTCTATAACTTTATCAATATCTTCACCATGGATA 1696167 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625 | ||||| || | ||||| ||| || || ||||||||||| | || | ||| || Sbjct 1696166 GCAACTGCAACTCTCATTAGCATATGTTGTGGTCTTTCAACAACTTTCCCATGTATCTTT 1696107 Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63685 || || || ||| || | || ||||||||||| || || || ||| |||| || Sbjct 1696106 AATAAATAACTTTTCTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAATCTCTATCA 1696047 Query 63686 TAAATAATAACCGAGTTGAGTTTAT 63710 ||||| || | || || | ||||| Sbjct 1696046 TAAATTATTGCGGAATTTAATTTAT 1696022 >seq25 Length=3544016 Score = 118 bits (130), Expect = 1e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 32930 ATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAA 32989 |||||||||||| || | | ||||||||| || || | ||||| ||||| |||||||| Sbjct 2908036 ATATGTATCAATTAATAAAGAATACATTTCTGAGTGTACATTTTCCATGGCGATTTGAAA 2908095 Query 32990 TCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATT 33049 || |||||||| | || || || || ||||||||| || ||||||||| | | ||| Sbjct 2908096 GCCATAGAAGCAACGTGCTTCTGTTATTTGTACTTCTTGACTAAATCGTTCGACGAGATT 2908155 Query 33050 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 33109 ||||| || ||||| ||| || ||||| || || || || | |||||||| ||| Sbjct 2908156 CTCATTGACAATTCCATCAGAAGCGGCAAAGAATGCTAAGACGTAAGATATAAAATGTTT 2908215 Query 33110 TTC 33112 || Sbjct 2908216 CTC 2908218 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 32457 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATAT 32516 ||| ||| |||| | | || |||||| || || || || || |||||||| |||||| Sbjct 2907275 TTACAAACCTTTTCACAGCCTAATTCAATAAGTAACCTGTCAGCAACAAATTCGATATAT 2907334 Query 32517 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 32576 ||| | || ||||||||||||||| | || ||| || | || | || | |||| Sbjct 2907335 TGACACATAAGTTTACAATTCATTCCTATCATTTCAACAGGTAAGGCATCCGTTAAAAAT 2907394 Query 32577 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGA 32636 ||||||||||| ||| || ||| | ||||| ||| | ||| ||| | ||| Sbjct 2907395 TCTTGTTCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGTTCGGAAGATGGTTTT 2907454 Query 32637 TACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 32685 | | | ||||| ||||| |||||||||||||| || ||||| |||| Sbjct 2907455 TGTATAATGTGTTTGAACATTAAACATGCGAAATCACAATGTAGTCCCT 2907503 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||| |||||| ||| || ||||| ||||| ||||||||||||||| ||||||||||| Sbjct 2907100 CATTACTCCCCATTTCTGATATTCTCCCACCTTTTTTTCGAAAAAATTTGTTTTACCTTC 2907159 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATT 32449 || || |||| ||||| ||||| || ||||| Sbjct 2907160 CAAAGAGATATGCTCCATAAAATCAAACGGATT 2907192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633609300133600