Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq25 145 8e-30 seq109 118 1e-21 seq9 118 1e-21 seq61 113 5e-20 >seq25 Length=3544016 Score = 145 bits (160), Expect = 8e-30 Identities = 170/227 (75%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || |||||||| ||||| | |||||||||||| || || ||||| ||||| || ||||| Sbjct 2908034 ATATATGTATCAATTAATAAAGAATACATTTCTGAGTGTACATTTTCCATGGCGATTTGA 2908093 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || ||||| || | ||||| || || || ||||||||| ||||| || |||||| Sbjct 2908094 AAGCCATAGAAGCAACGTGCTTCTGTTATTTGTACTTCTTGACTAAATCGTTCGACGAGA 2908153 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || |||||||| || ||||| || || ||||| || || || | | |||||||||| Sbjct 2908154 TTCTCATTGACAATTCCATCAGAAGCGGCAAAGAATGCTAAGACGTAAGATATAAAATGT 2908213 Query 93542 TTCTC-ATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAA 93587 ||||| | | ||||| | ||| ||| || | ||||||| ||| Sbjct 2908214 TTCTCTTTGTTATTTAAAC-TATTCCAGTCCAACGTATCTTTTAAAA 2908259 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 |||| |||| || || | |||||| || ||||| | || || | || |||| ||| | Sbjct 2907695 CTTCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCCGGCATAAGACCTCTTTTTT 2907754 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | | ||| || || | ||||||||| || ||||||||||||||||| || ||||||| Sbjct 2907755 TCAACCAGAAAATAGCAGCAAAACTGCCGCTGAAAAATATACCTTCCACTGCAGCAAATG 2907814 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 | || | |||||| | || | || | | | | ||||| ||||| ||||| | | Sbjct 2907815 CAACTACACGTTCAGGGAACGTGGCACTTTCATGGTTTATCCAATTTAATGCCCACTGAG 2907874 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 ||||||| ||| ||| |||| | || || || ||||||||| | |||| Sbjct 2907875 CTTTTTTTGTAACACATGGTAAATTCTCAATTGCATTAAATAGGAAGTCTC 2907925 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638 |||| || ||||| ||||| || ||||||||||| || ||||| |||||||||||||| | Sbjct 2908315 CTTTAGAGAGATCCACTTCCTCCACAGTCCAAAAAGAGGCTTCCGCTTTTTTGTACATTT 2908374 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTA 93698 ||| ||||| | ||||||| || || | ||||| | | || || ||||| |||| Sbjct 2908375 GCCAAATGTCAGGCCATTGAATAGGGAAAACAACAAACCTACGTGGATTTTCTTTCAGTA 2908434 Query 93699 ACGGCTCTAGTTGTGGGT 93716 | || |||| || || || Sbjct 2908435 ATGGTTCTAATTCTGAGT 2908452 >seq109 Length=12087087 Score = 118 bits (130), Expect = 1e-21 Identities = 88/102 (86%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC-GGGAGCGTGGG 126327 |||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||||||| Sbjct 3534612 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCTCTGGGAGCGTGGG 3534553 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||||||||| | ||||| || || | ||||| || Sbjct 3534552 TTCGAACCCCACACTTAGCAAATGTTTTTTTTATTTTTTTTT 3534511 >seq9 Length=1636540 Score = 118 bits (130), Expect = 1e-21 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||| ||||| |||||||||| | |||||| Sbjct 1094725 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCAATTGGGAGC 1094666 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||| |||| Sbjct 1094665 GTGGGTTCGAACCCCACACCTGGCAAA 1094639 >seq61 Length=1494429 Score = 113 bits (124), Expect = 5e-20 Identities = 75/82 (91%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC-GGGAGCGTGGG 126327 |||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||||||| Sbjct 264528 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCTCTGGGAGCGTGGG 264469 Query 126328 TTCGAACCCCACACCTGACAAA 126349 |||||||||||||| | |||| Sbjct 264468 TTCGAACCCCACACTTAGCAAA 264447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556840850461840