Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq190 123 2e-23 seq65 93.3 4e-14 seq2840 86.0 5e-12 seq26 86.0 5e-12 >seq190 Length=691288 Score = 123 bits (136), Expect = 2e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 111270 AAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAA 111329 ||||||| ||||||||||| ||||| ||||||||| | || |||| ||| ||||| Sbjct 255378 AAAAATTCAAGACAAAGAAGGAATTCCCCCTGATCAACAACGTCTGATTTTTGCTGGCAA 255437 Query 111330 ACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111389 |||||| |||||| | |||| | | ||||||||||| ||||| ||||||||||| || Sbjct 255438 ACAATTAGAAGATGGGAGAACTCTTTCGGATTATAATATCCAAAAGGAATCTACACTCCA 255497 Query 111390 TTTAGTGTTGCGTCTGCGCGGTGGCA 111415 ||| || ||||| || || || |||| Sbjct 255498 TTTGGTATTGCGACTTCGTGGCGGCA 255523 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 111270 AAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAA 111329 ||||||| ||||||||||| ||||| ||||||||| | || |||| ||| ||||| Sbjct 255150 AAAAATTCAAGACAAAGAAGGAATTCCCCCTGATCAACAACGTCTGATTTTTGCTGGCAA 255209 Query 111330 ACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111389 |||||| |||||| | |||| | | ||||||||||| ||||| ||||||||||| || Sbjct 255210 ACAATTAGAAGATGGGAGAACTCTTTCGGATTATAATATCCAAAAGGAATCTACACTCCA 255269 Query 111390 TTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || ||||| || || || || Sbjct 255270 TTTGGTATTGCGACTTCGTGGCGG 255293 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||||||||| | || || ||||| ||||| | || ||| || Sbjct 260298 ATGCAAATTTTTGTCAAAACACTCACAGGAAAAACTATTACTCTTGAGGTAGAAGCCTCA 260357 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | || ||| ||||| || |||||||| |||| || ||| Sbjct 260358 GATACAATAGAGAATGTGAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGACCAA 260417 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| ||| ||||| ||||| |||||| | |||| | | ||||| ||| Sbjct 260418 CAACGTTTGATTTTTGCTGGCAAGCAATTAGAAGATGGAAGAACTCTTTCGGATTACAAT 260477 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || ||||| ||||||||||| ||||| || ||||| || || || |||| Sbjct 260478 ATCCAAAAGGAATCTACACTCCATTTGGTATTGCGACTTCGAGGAGGCA 260526 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || |||||||| | || || |||||||||||| ||||| ||| | Sbjct 260526 ATGCAAATCTTCGTCAAAACACTCACAGGGAAAACCATTACCTTGGAAGTAGAAGCTTCT 260585 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | || || |||||| ||||| ||||| |||| || || Sbjct 260586 GATACAATCGAAAATGTTAAGGCGAAAATTCAAGACAAGGAAGGAATTCCTCCTGACCAG 260645 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | ||| || || ||||| |||||| | |||| || |||||||| Sbjct 260646 CAACGTTTGATCTTTGCTGGGAAGCAATTAGAAGATGGGAGAACTTTGTTGGATTATAAC 260705 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| |||||||| || |||||||||||| | || || || || Sbjct 260706 ATTCAAAAGGAATCTACTCTGCATTTAGTGTTGAGACTCCGTGGAGG 260752 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 111270 AAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAA 111329 ||||||| ||||| ||||| |||| ||||| ||| | | || | ||| ||||| Sbjct 259925 AAAAATTCAGGACAAGGAAGGAATTCCACCTGATCAGCAACGCTTGATCTTTGCTGGCAA 259984 Query 111330 ACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111389 ||| || || ||| | |||| || | ||||||||||| ||||| ||||||||||| || Sbjct 259985 ACAGTTAGAGGATGGAAGAACTTTGTCAGATTATAATATCCAAAAGGAATCTACACTCCA 260044 Query 111390 TTTAGTGTTGCGTCTGCGCGGTGGCA 111415 ||| || ||||| || || || |||| Sbjct 260045 TTTGGTATTGCGACTTCGTGGCGGCA 260070 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| |||||| | || || || ||||| ||| ||||| ||| | Sbjct 255751 ATGCAGATTTTTGTTAAAACGCTCACAGGTAAGACCATCACCTTGGAAGTAGAAGCTTCT 255810 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | || ||| |||||| ||||||||||| |||| || || Sbjct 255811 GACACAATAGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATTCCTCCTGACCAG 255870 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || |||||||| || ||| | |||| || | |||||||| Sbjct 255871 CAACGTTTAATCTTCGCTGGTAAACAATTAGAGGATGGGAGAACTCTGTCAGATTATAAC 255930 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || |||||||| ||||| ||| | || ||| | || || || |||| Sbjct 255931 ATTCAGAAAGAATCAACACTCCATCTTGTTTTGAGACTTCGAGGAGGCA 255979 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | || || |||||||| || ||||| ||| | Sbjct 256207 ATGCAAATCTTTGTCAAGACACTCACAGGAAAAACCATCACTTTGGAAGTAGAAGCTTCT 256266 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | || ||| |||||| ||||||||||| |||| ||||| Sbjct 256267 GACACAATAGAAAACGTGAAAGCTAAAATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 256326 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | ||| || || || || |||||| | |||| || ||||| || Sbjct 256327 CAACGTTTGATCTTTGCTGGGAAGCAGTTAGAAGATGGAAGAACTTTGTTGGATTACAAC 256386 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| ||||||||||| |||||||| || | || || ||||| Sbjct 256387 ATTCAAAAGGAATCTACACTCCATTTAGTTTTAAGACTCCGAGGTGG 256433 >seq65 Length=2871674 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| | || || || || |||||| |||| ||| | Sbjct 612014 ATGCAAATTTTTGTAAAAACTCTTACTGGAAAGACTATTACCTTGGAGGTTGAAGCGTCT 611955 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| ||||||| ||||| || || |||| ||||| Sbjct 611954 GATACCATTGAAAATGTCAAAGCAAAAATTCAGGACAAGGAGGGAATTCCACCAGATCAG 611895 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111364 ||||| | || | ||| ||||| |||||||||||| | | ||| | ||||||||| Sbjct 611894 CAAAGATTGATCTTTGCCGGCAAGCAATTGGAAGATGGACGCACACTTT--CCGATTATA 611837 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||| ||||| ||||| || || ||| | || | ||| || | || || Sbjct 611836 ATATTCAAAAGGAATCAACTCTGCATCTTGTTCTTCGTTTGAGAGGAGG 611788 Score = 82.4 bits (90), Expect = 6e-11 Identities = 161/235 (69%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||||||||| || || || | || || ||||| |||||| | ||| || || Sbjct 610875 AATGCAAATTTTCGTTAAGACTCTCACGGGTAAAACTATTACCCTTGAAGTTGAGGCCTC 610816 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | ||| | || ||| |||||| ||||| ||||| ||||| || || Sbjct 610815 TGACACAATTGAAAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATTCCCCCAGACCA 610756 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTAT 111363 || || | |||| || ||||||||||||||||| | | ||| | | |||||| Sbjct 610755 GCAGAGATTGATTTTCGCTGGCAAACAATTGGAAGACGGACGCACACTTT--CTGATTAT 610698 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG-CAAT 111417 || || ||||||||||| || || || | || | ||||| || ||||| |||| Sbjct 610697 AACATTCAAAAAGAATCGACTCTTCACCTTGTACTTCGTCTCCGAGGTGGTCAAT 610643 >seq2840 Length=3276 Score = 86.0 bits (94), Expect = 5e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 111301 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111360 ||||| ||||| | || | ||| || ||||||||||||||| | |||| || | ||| Sbjct 3200 GATCAGCAAAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACTTTGTCTGAT 3141 Query 111361 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGT 111402 |||||||| || || ||||||||| ||||||| ||| | ||| Sbjct 3140 TATAATATTCAGAAGGAATCTACATTACATTTGGTGCTTCGT 3099 >seq26 Length=4553502 Score = 86.0 bits (94), Expect = 5e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 111301 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111360 ||||| ||||| | || | ||| || ||||||||||||||| | |||| || | ||| Sbjct 253134 GATCAGCAAAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACTTTGTCTGAT 253193 Query 111361 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGT 111402 |||||||| || || ||||||||| ||||||| ||| | ||| Sbjct 253194 TATAATATTCAGAAGGAATCTACATTACATTTGGTGCTTCGT 253235 Score = 86.0 bits (94), Expect = 5e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 111301 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111360 ||||| ||||| | || | ||| || ||||||||||||||| | |||| || | ||| Sbjct 264940 GATCAGCAAAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACTTTGTCTGAT 264881 Query 111361 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGT 111402 |||||||| || || ||||||||| ||||||| ||| | ||| Sbjct 264880 TATAATATTCAGAAGGAATCTACATTACATTTGGTGCTTCGT 264839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423025223477200