Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq190 118 8e-22 seq2840 96.9 2e-15 seq26 96.9 2e-15 seq65 89.7 4e-13 >seq190 Length=691288 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| || ||||| || ||||| ||||| | ||| ||||| | Sbjct 254839 ATGCAGATCTTTGTTAAGACCTTAACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 254898 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || ||| || || |||||||| | ||| | |||| Sbjct 254899 GACACAATAGAAAATGTGAAAGCAAAGATCCAAGACAAAGAGGGAATTCCTCCAGACCAG 254958 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | | || |||||||| |||||| |||||||| || |||| | | ||||||||| Sbjct 254959 CAGCGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTCTCAGATTACAAT 255018 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 |||||||| |||||||||||||| ||||||| || Sbjct 255019 ATTCAGAAAGAATCTACTCTTCACTTGGTATTGCG 255053 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | |||||| | || || ||||| ||||| | || |||||| || Sbjct 260298 ATGCAAATTTTTGTCAAAACACTCACAGGAAAAACTATTACTCTTGAGGTAGAAGCCTCA 260357 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || ||||| |||||||| || | ||| ||||| Sbjct 260358 GATACAATAGAGAATGTGAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGACCAA 260417 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | || ||||||||||| ||| |||||||| || |||| | | ||||||||| Sbjct 260418 CAACGTTTGATTTTTGCTGGCAAGCAATTAGAAGATGGAAGAACTCTTTCGGATTACAAT 260477 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||||||||| || ||| ||||||| || | |||||||| Sbjct 260478 ATCCAAAAGGAATCTACACTCCATTTGGTATTGCGACTTCGAGGAGG 260524 Score = 102 bits (112), Expect = 6e-17 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| || ||||| || ||||| ||||| | ||| ||||| | Sbjct 259842 ATGCAGATCTTTGTTAAGACCTTAACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 259901 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | || ||||| ||||||| || || || || | ||||| | Sbjct 259902 GACACAATCGAAAATGTTAAGGCAAAAATTCAGGACAAGGAAGGAATTCCACCTGATCAG 259961 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 |||| | | ||||||||||||||||| |||| ||| || |||| || | ||||| Sbjct 259962 CAAC---GCTTGATCTTTGCTGGCAAACAGTTAGAGGATGGAAGAACTTTGTCAGATTAT 260018 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 ||||| || ||||||||||| || ||| ||||||| || Sbjct 260019 AATATCCAAAAGGAATCTACACTCCATTTGGTATTGCG 260056 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | |||||| | || || ||||| ||||| | || || || || Sbjct 255067 ATGCAGATCTTTGTCAAAACACTCACAGGAAAAACTATTACTCTTGAGGTAGAGGCTTCA 255126 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| ||||||| || ||||| || | || | ||| Sbjct 255127 GACACAATAGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGAATTCCCCCTGATCAA 255186 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | || || ||||||||||||||| |||||||| | |||| | | ||||| ||| Sbjct 255187 CAACGTCTGATTTTTGCTGGCAAACAATTAGAAGATGGGAGAACTCTTTCGGATTATAAT 255246 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 || || ||||||||||| || ||| ||||||| || Sbjct 255247 ATCCAAAAGGAATCTACACTCCATTTGGTATTGCG 255281 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | |||||| | || || ||||| ||||| | || || || || Sbjct 255295 ATGCAGATCTTTGTCAAAACACTCACAGGAAAAACTATTACTCTTGAGGTAGAGGCTTCA 255354 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| ||||||| || ||||| || | || | ||| Sbjct 255355 GACACAATAGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGAATTCCCCCTGATCAA 255414 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | || || ||||||||||||||| |||||||| | |||| | | ||||| ||| Sbjct 255415 CAACGTCTGATTTTTGCTGGCAAACAATTAGAAGATGGGAGAACTCTTTCGGATTATAAT 255474 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 || || ||||||||||| || ||| ||||||| || Sbjct 255475 ATCCAAAAGGAATCTACACTCCATTTGGTATTGCG 255509 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | |||||| | || || |||||||||||| ||||| ||||| | Sbjct 260526 ATGCAAATCTTCGTCAAAACACTCACAGGGAAAACCATTACCTTGGAAGTAGAAGCTTCT 260585 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| |||||| || || || || | ||| |||| Sbjct 260586 GATACAATCGAAAATGTTAAGGCGAAAATTCAAGACAAGGAAGGAATTCCTCCTGACCAG 260645 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | ||||||||||| || ||| |||||||| | |||| || ||||| || Sbjct 260646 CAACGTTTGATCTTTGCTGGGAAGCAATTAGAAGATGGGAGAACTTTGTTGGATTATAAC 260705 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| |||||||||||||| ||| | || || | | || |||||| Sbjct 260706 ATTCAAAAGGAATCTACTCTGCATTTAGTGTTGAGACTCCGTGGAGGA 260753 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | |||||||| || || |||||||| ||| ||||| ||||| | Sbjct 255523 ATGCAGATCTTTGTCAAAACATTGACAGGAAAAACCATCACCTTGGAAGTAGAAGCTTCT 255582 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 | || | | | | || ||| || || |||||||| | ||| | |||| Sbjct 255583 GGCACAATAGAGAACGTGAAAACAAAGATCCAAGACAAAGAGGGAATTCCTCCAGACCAG 255642 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | | ||||||||||| ||||| |||||||| | |||| || | || || || Sbjct 255643 CAGCGTTTGATCTTTGCTGGTAAACAGTTAGAAGATGGGAGAACTCTGTCAGACTATAAC 255702 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| ||||| || || ||| | ||||| || | |||||||| Sbjct 255703 ATTCAGAAAGAATCAACACTCCATCTTGTATTGCGACTCCGAGGAGG 255749 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | |||||| | || || ||||| ||||| | || || || || Sbjct 260070 ATGCAGATCTTTGTCAAAACACTCACAGGAAAAACTATTACTCTCGAGGTAGAGGCTTCA 260129 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| |||||| || ||||| || | ||| |||| Sbjct 260130 GACACAATAGAGAATGTTAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCTGACCAG 260189 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | ||||| ||||| |||||| |||| ||| | |||| | | || ||||| Sbjct 260190 CAACGTTTAATCTTCGCTGGTAAACAATTAGAGGATGGGAGAACTCTTTCGGACTACAAC 260249 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| |||||||| ||| |||| || | | |||||||| Sbjct 260250 ATTCAGAAGGAGTCTACTCTCCATTTGGTGTTGAGACTTCGAGGAGG 260296 >seq2840 Length=3276 Score = 96.9 bits (106), Expect = 2e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || ||| | ||||||||||| |||||| | |||||| || |||| || | ||||| Sbjct 3197 CAGCAAAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACTTTGTCTGATTAT 3138 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||||||||||||||| | ||| |||| | |||||| |||| ||| Sbjct 3137 AATATTCAGAAGGAATCTACATTACATTTGGTGCTTCGTTTAAGAGGCGGA 3087 >seq26 Length=4553502 Score = 96.9 bits (106), Expect = 2e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || ||| | ||||||||||| |||||| | |||||| || |||| || | ||||| Sbjct 253137 CAGCAAAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACTTTGTCTGATTAT 253196 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||||||||||||||| | ||| |||| | |||||| |||| ||| Sbjct 253197 AATATTCAGAAGGAATCTACATTACATTTGGTGCTTCGTTTAAGAGGCGGA 253247 Score = 96.9 bits (106), Expect = 2e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || ||| | ||||||||||| |||||| | |||||| || |||| || | ||||| Sbjct 264937 CAGCAAAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACTTTGTCTGATTAT 264878 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||||||||||||||| | ||| |||| | |||||| |||| ||| Sbjct 264877 AATATTCAGAAGGAATCTACATTACATTTGGTGCTTCGTTTAAGAGGCGGA 264827 >seq65 Length=2871674 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || ||||| || || ||||| || ||| |||| ||||| || Sbjct 612470 ATGCAGATCTTCGTCAAGACATTGACAGGTAAAACGATAACCCTGGAGGTTGAAGCATCA 612411 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | || ||||||| || || || || | ||| | ||||| Sbjct 612410 GATACAATTGAAAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCAA 612351 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | || |||||||| || ||||||||||| | || | | ||||| || Sbjct 612350 CAGAGATTGATATTTGCTGGAAAGCAACTAGAAGACGGACGTACACTTTCTGATTATAAC 612291 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| ||||| || ||| | ||| | ||| ||||| || ||||||| Sbjct 612290 ATTCAAAAGGAGTCGACTTTACATCTTGTACTACGTCTAAGAGGAGG 612244 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || | || || |||||||||||| | ||| || || | Sbjct 611330 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAAGTTGAGGCTTCT 611271 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| || ||| |||||||| ||| | || | | || Sbjct 611270 GACACAATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAG 611211 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | || |||||||| |||||||| |||||| | || | | ||||| || Sbjct 611210 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGACGCACACTTTCGGATTATAAC 611151 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||| || |||||| | || | ||||| ||||||| Sbjct 611150 ATCCAAAAGGAATCAACCCTTCATCTTGTTCTGCGTTTGAGAGGAGG 611104 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || | || || |||||||||||| | ||| || || | Sbjct 611558 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAAGTTGAGGCTTCT 611499 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| || ||| |||||||| ||| | || | | || Sbjct 611498 GACACAATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAG 611439 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | || |||||||| |||||||| |||||| | || | | ||||| || Sbjct 611438 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGACGCACACTTTCGGATTATAAC 611379 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||| || |||||| | || | ||||| ||||||| Sbjct 611378 ATCCAAAAGGAATCAACCCTTCATCTTGTTCTGCGTTTGAGAGGAGG 611332 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || | || || |||||||||||| | ||| || || | Sbjct 611786 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAAGTTGAGGCTTCT 611727 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| || ||| |||||||| ||| | || | | || Sbjct 611726 GACACAATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAG 611667 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||| || ||||||||| | ||||| | || | ||||||| || Sbjct 611666 CAGAGATTGATCTTCGCCGGCAAACAATTGGAAGACGGACGCACACTTTCCGATTATAAC 611607 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||| ||||| ||| | || | ||||| ||||||| Sbjct 611606 ATCCAAAAGGAATCAACTCTGCATCTTGTTCTTCGTTTGAGAGGAGG 611560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358112290924564