Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq190 140 3e-28 seq65 104 2e-17 >seq190 Length=691288 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || ||||||||||| | ||| | || |||||||| |||||||| ||||| Sbjct 255980 ATGCCTCCTCGAAGTCTCAAAACAAGATGGAGTGTTGATTCTTTCTGAATGTTATAATCT 255921 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| | ||| || | ||||||||||||| |||| | ||| || ||||| ||| Sbjct 255920 GACAGAGTTCTCCCATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGA 255861 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||| || ||| | | ||| | ||||| | | ||| Sbjct 255860 GGAATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCTATTGTGTCAGAAGCTTCT 255801 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || || || ||||| |||||||||||||| Sbjct 255800 ACTTCCAAGGTGATGGTCTTACCTGTGAGCGTTTTAACAAAAATCTGCAT 255751 Score = 132 bits (146), Expect = 4e-26 Identities = 176/242 (73%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 114146 TTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTT 114205 |||| || | || ||||| |||||||| |||||||| | |||||||| ||||||||||| Sbjct 260762 TTTAGAACTTCCTCCACGGAGTCTCAACACTAAATGCAGAGTAGATTCCTTTTGAATGTT 260703 Query 114206 GTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTG 114265 ||||| || ||| | |||||| | ||| || ||||| |||| | ||| || || Sbjct 260702 ATAATCCAACAAAGTTCTCCCATCTTCTAATTGCTTCCCAGCAAAGATCAAACGTTGCTG 260643 Query 114266 GTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGG 114324 ||| |||||||| ||||| ||||| ||| ||| | ||| | | ||| | || || | Sbjct 260642 GTCAGGAGGAATTCCTTCCTTGTCTTGAAT-TTTCGCCTTAACATTTTCGATTGTATCAG 260584 Query 114325 TGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 | ||| || |||| ||| | ||||| || || || ||||| || || || |||||| Sbjct 260583 AAGCTTCTACTTCCAAGGTAATGGTTTTCCCTGTGAGTGTTTTGACGAAGATTTGCATGC 260524 Query 114385 CT 114386 || Sbjct 260523 CT 260522 Score = 125 bits (138), Expect = 6e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || ||||| ||||||||||| | |||||||| ||||||||||||||||| Sbjct 256434 ACCACCTCGGAGTCTTAAAACTAAATGGAGTGTAGATTCCTTTTGAATGTTGTAATCCAA 256375 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||| | |||||| | || || ||||| |||| | ||| || || || ||||| Sbjct 256374 CAAAGTTCTTCCATCTTCTAACTGCTTCCCAGCAAAGATCAAACGTTGCTGATCAGGAGG 256315 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||||||||| ||| || ||| | | ||| | ||||| | | ||| || Sbjct 256314 AATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCTAC 256255 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 |||| || | ||||| || || || || || ||||| || |||||| || Sbjct 256254 TTCCAAAGTGATGGTTTTTCCTGTGAGTGTCTTGACAAAGATTTGCATGCCT 256203 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || |||| ||| || | ||| | || |||||||| |||||||| || || Sbjct 255752 ATACCTCCTCGGAGTCGCAATACAAGATGGAGTGTTGATTCTTTCTGAATGTTATAGTCT 255693 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| | |||||| | ||||||||||| |||| | |||||| ||||| ||| Sbjct 255692 GACAGAGTTCTCCCATCTTCTAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGA 255633 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || |||||||| |||||| ||| | | || | ||| | | | ||| Sbjct 255632 GGAATTCCCTCTTTGTCTTGGATCTTTGTTTTCACGTTCTCTATTGTGCCAGAAGCTTCT 255573 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | ||||| || |||| ||||| ||||| ||||||||| Sbjct 255572 ACTTCCAAGGTGATGGTTTTTCCTGTCAATGTTTTGACAAAGATCTGCATG 255522 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || |||||||| |||| ||| || || || | ||||||||||| ||||| |||||||| Sbjct 255068 ATGCCGCCACGAAGTCGCAATACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAATCT 255009 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | |||||| | |||||||||||| | || | |||||| ||||| ||| Sbjct 255008 GAGAGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGCTGCTGGTCTGGA 254949 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || |||||||| |||||| ||| | | ||| | ||||| | | ||| Sbjct 254948 GGAATTCCCTCTTTGTCTTGGATCTTTGCTTTCACATTTTCTATTGTGTCAGAAGCTTCA 254889 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || | || || ||||| |||||||| Sbjct 254888 ACTTCAAGAGTAATAGTTTTTCCTGTTAAGGTCTTAACAAAGATCTGCAT 254839 Score = 118 bits (130), Expect = 9e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| |||| ||| || ||||| | |||||||| ||||| || || ||||| Sbjct 255296 ATACCGCCACGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCC 255237 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | |||||| | |||||| ||||| | || ||||| ||||| || || Sbjct 255236 GAAAGAGTTCTCCCATCTTCTAATTGTTTGCCAGCAAAAATCAGACGTTGTTGATCAGGG 255177 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||||||||| ||| ||||| ||| | | || | ||||| | | || Sbjct 255176 GGAATTCCTTCTTTGTCTTGAAT-TTTTGCCTTAACATTCTCTATTGTGTCTGAAGCCTC 255118 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | ||||| || || || ||||| ||||| ||||||||| Sbjct 255117 TACCTCAAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCATG 255066 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || |||||||| || | ||| | || |||||||| || ||||| ||||| Sbjct 256208 ATGCCTCCTCGGAGTCTCAATACAAGATGAAGTGTTGATTCTTTCTGTATGTTATAATCT 256149 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| | ||| || | |||||||||||| |||| | |||||| ||||| ||| Sbjct 256148 GACAGAGTTCTTCCATCCTCTAACTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGA 256089 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||| || ||| | | || | ||||| | | ||| Sbjct 256088 GGAATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTCTCTATTGTGTCTGAAGCTTCT 256029 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | || | ||||| || |||| ||||| ||||| || |||||| || Sbjct 256028 ACTTCTAACGTGATGGTTTTTCCTGTCAATGTTTTGACAAAGATTTGCATGCCT 255975 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || |||||||| || ||||| | ||||| || || ||||||||||| || Sbjct 260299 ATGCCTCCTCGAAGTCTCAACACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCC 260240 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||| || | ||||||||||||| |||| | ||| || ||||| ||| Sbjct 260239 GAAAGAGTTCTCCCATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGA 260180 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||||||||| ||| ||| | ||| | | || | ||||| | | || Sbjct 260179 GGAATTCCTTCTTTGTCTTGAAT-TTTCGCCTTAACATTCTCTATTGTGTCTGAAGCCTC 260121 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | ||||| || || || ||||| ||||| ||||||||| Sbjct 260120 TACCTCGAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCATG 260069 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || |||||||| |||| ||| || ||||| | |||||||| ||||| || || ||||| Sbjct 255524 ATGCCGCCACGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCC 255465 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | |||||| | |||||| ||||| | || ||||| ||||| || || Sbjct 255464 GAAAGAGTTCTCCCATCTTCTAATTGTTTGCCAGCAAAAATCAGACGTTGTTGATCAGGG 255405 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||||||||| ||| ||||| ||| | | || | ||||| | | || Sbjct 255404 GGAATTCCTTCTTTGTCTTGAAT-TTTTGCCTTAACATTCTCTATTGTGTCTGAAGCCTC 255346 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || || ||||| ||||| |||||||| Sbjct 255345 TACCTCAAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCAT 255295 >seq65 Length=2871674 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 114179 ATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTG 114238 ||||| || || || ||||||||||| ||||| | ||||| ||||| ||||| Sbjct 612267 ATGTAAAGTCGACTCCTTTTGAATGTTATAATCAGAAAGTGTACGTCCGTCTTCTAGTTG 612326 Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298 || ||||| | || | | ||||||||| |||||||| ||||| ||||| ||| || Sbjct 612327 CTTTCCAGCAAATATCAATCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGAATTTT 612386 Query 114299 TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358 | ||| | | ||||| || || | | ||| || |||| ||| | |||||| || || Sbjct 612387 TGCTTTCACGTTTTCAATTGTATCTGATGCTTCAACCTCCAGGGTTATCGTTTTACCTGT 612446 Query 114359 CAGAGTTTTTACAAAAATCTGCATG 114383 || || || || || ||||||||| Sbjct 612447 CAATGTCTTGACGAAGATCTGCATG 612471 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||||||||||||||| ||||| | || || ||||| | |||||| ||| Sbjct 610678 GTCGATTCTTTTTGAATGTTATAATCAGAAAGTGTGCGTCCGTCTTCCAATTGTTTGCCA 610737 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || | | ||| ||||| || ||||| ||||| ||||| ||| || ||| Sbjct 610738 GCGAAAATCAATCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGAATTTTGGCTTTG 610797 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||||| | || || || || | ||| | ||||| || || ||||| Sbjct 610798 ACATTTTCAATTGTGTCAGAGGCCTCAACTTCAAGGGTAATAGTTTTACCCGTGAGAGTC 610857 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||| ||||| Sbjct 610858 TTAACGAAAATTTGCAT 610874 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || ||||| |||||||| || |||||| | || || |||||| Sbjct 611805 AACAAGATGCAGAGTTGATTCCTTTTGAATATTATAATCGGAAAGTGTGCGTCCATCTTC 611864 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | ||| || || || |||| | | || || || || ||||| || || ||||| Sbjct 611865 CAATTGCTTGCCGGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCCTCCTTGTCCTG 611924 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||| ||| ||| | | ||||| ||| || | | ||| || |||| ||| | || || Sbjct 611925 AATTTTTGCTTTGACATTTTCAATGGTATCAGACGCTTCAACCTCCAAGGTAATAGTCTT 611984 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || ||||||||||||||||| ||||| Sbjct 611985 TCCAGTAAGAGTTTTTACAAAAATTTGCAT 612014 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || || || ||||| || || ||||| || |||||| |||||| Sbjct 610893 AACAAGATGAAGGGTTGACTCCTTTTGGATATTATAATCAGACAATGTACGATCATCTTC 610952 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | |||||| || ||| |||| | | ||| || || || |||||||||||||| || Sbjct 610953 TAATTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGTGGAATGCCTTCTTTATCTTG 611012 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 |||||| || | | |||| ||||| | | || || || | ||| | ||||| Sbjct 611013 AATCTTGGCCTTAACATTCTCAATTGTGTCAGAAGCCTCAACCTCAAGGGTAATGGTTTT 611072 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || || || || ||||| ||||| Sbjct 611073 ACCTGTGAGGGTCTTGACGAAAATTTGCAT 611102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420119724967992