Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq30 100 2e-16 seq65 93.3 3e-14 seq203 86.0 5e-12 >seq30 Length=830597 Score = 100 bits (110), Expect = 2e-16 Identities = 80/93 (86%), Gaps = 4/93 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || |||||||| || Sbjct 44228 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGAAA 44287 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 ||| ||||||| || ||||||||||| ||| || Sbjct 44288 CCATAACTGATTTAATGAGCCATTCGCGGTTTC 44320 Score = 100 bits (110), Expect = 2e-16 Identities = 80/93 (86%), Gaps = 4/93 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || |||||||| || Sbjct 44228 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGAAA 44287 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 ||| ||||||| || ||||||||||| ||| || Sbjct 44288 CCATAACTGATTTAATGAGCCATTCGCGGTTTC 44320 >seq65 Length=2871674 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||||||||||| || || || ||||| || || ||||| ||||| || ||||| | Sbjct 611787 ACCTCCTCTCAAACGAAGAACAAGATGCAGAGTTGATTCCTTTTGAATATTATAATC-GG 611845 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| || | || |||||||||||||||||||| |||| | |||||||| | Sbjct 611846 AAAGTGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAGATCAATCTTTGCTGATCTGGTG 611905 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATT 34075 | | | ||| |||||| | | ||||||||| || | | || |||||| | || Sbjct 611906 GAATTCCCTCCTTGTCC-TGAATTTTTGCTT--TGACATTTTCAATGGTATCAGACGCTT 611962 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || | || || || ||||| || || ||||| ||||| |||||||| Sbjct 611963 CAACCTCCAAGGTAATAGTCTTTCCAGTAAGAGTTTTTACAAAAATTTGCAT 612014 Score = 86.0 bits (94), Expect = 5e-12 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || || |||||||| || ||||||||||| ||||| |||| || ||| || Sbjct 612025 AGACGAAGTACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAGTCTG-AAAGTGTACG 612083 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| ||||||||||||||||| || |||| | |||||||| || | || || Sbjct 612084 TCCGTCTTCCAATTGCTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCCTTC 612143 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCATTCGACCG 34087 ||| | | | ||||||||| | | ||| | |||| | | || ||||| | Sbjct 612144 TTTAT-CTTGGATTTTTGCTTTAACGTTTTCAATCGTATCTGAGGCCTCAACTTCGAGTG 612202 Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | |||||||| || || || || || || || |||||||| Sbjct 612203 TAATTGTTTTACCAGTGAGAGTCTTGACGAAAATTTGCAT 612242 >seq203 Length=273199 Score = 86.0 bits (94), Expect = 5e-12 Identities = 77/93 (83%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || |||||||| || Sbjct 61106 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGATACGATCTAAGAAA 61047 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 || ||||||| || |||| |||| | ||| || Sbjct 61046 CCGTAACTGATTTAATGAGTCATTTGCGGTTTC 61014 Score = 86.0 bits (94), Expect = 5e-12 Identities = 77/93 (83%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || |||||||| || Sbjct 61106 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGATACGATCTAAGAAA 61047 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 || ||||||| || |||| |||| | ||| || Sbjct 61046 CCGTAACTGATTTAATGAGTCATTTGCGGTTTC 61014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397048530858532