Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq507 102 9e-17 seq144 98.7 1e-15 seq65 93.3 5e-14 seq4 91.5 2e-13 seq174 87.8 2e-12 seq33 86.0 7e-12 seq190 84.2 2e-11 >seq507 Length=66916 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 53358 AAAAATCATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 53299 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 53298 TAACCACTATACTACCGAGGA 53278 >seq144 Length=113180 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/91 (85%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| ||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 40501 AAAAATCATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 40560 Query 57058 TCACCACTATACTACCGAGGA-TTGAATATA 57087 | |||||||||||| |||||| |||| |||| Sbjct 40561 TAACCACTATACTATCGAGGACTTGATTATA 40591 >seq65 Length=2871674 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||||| ||| | || | ||| || || |||||||||||| || ||||||| Sbjct 612244 CCTCCTCTTAGACGTAGTACAAGATGTAAAGTCGACTCCTTTTGAATGTTATAATCAGAA 612303 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| ||||| ||||| ||||| ||||| | || ||| ||||| | || Sbjct 612304 AGTGTACGTCCGTCTTCTAGTTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGAGGA 612363 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||||| | ||| |||||| ||| | | | | || || | ||| || Sbjct 612364 ATTCCTTCCTTGT-CTTGAATTTTTGCTTTCACGTTTTCAATTGTATCTGATGCTTCAAC 612422 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || || ||||| || || | ||||| || ||||| ||||| Sbjct 612423 CTCCAGGGTTATCGTTTTACCTGTCAATGTCTTGACGAAGATCTGCAT 612470 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| ||||| | || | ||||| || |||||||||||||| ||||| | Sbjct 611787 ACCTCCTCTCAAACGAAGAACAAGATGCAGAGTTGATTCCTTTTGAATATTATAATCGGA 611846 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || | ||||| || || || || | || ||||| || | ||| Sbjct 611847 AAGTGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAGATCAATCTTTGCTGATCTGGTGG 611906 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | |||||||||| ||| |||||| ||||| | | | || || || ||| | Sbjct 611907 AATTCCCTCCTTGTCC-TGAATTTTTGCTTTGACATTTTCAATGGTATCAGACGCTTCAA 611965 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || || || || || || || || |||||||| |||||||| Sbjct 611966 CCTCCAAGGTAATAGTCTTTCCAGTAAGAGTTTTTACAAAAATTTGCAT 612014 >seq4 Length=952654 Score = 91.5 bits (100), Expect = 2e-13 Identities = 72/86 (84%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 56998 AAAAATTTT---CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||||||| | |||| || | | |||||||||| ||||| |||||||||||||||| | Sbjct 649067 AAAAATTATAAACTCCCCGACGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGA 649126 Query 57055 TACTCACCACTATACTACCGAGGATT 57080 |||| |||||||||||| |||||||| Sbjct 649127 TACTAACCACTATACTATCGAGGATT 649152 >seq174 Length=4765277 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 628248 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 628307 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 628308 ATACTATCGAGGA 628320 >seq33 Length=501593 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 345562 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 345621 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 345622 TACTATCGAGGA 345633 >seq190 Length=691288 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||||| | | ||| || | ||| | ||| || || || || || ||||| | | Sbjct 256205 CCTCCTCGGAGTCTCAATACAAGATGAAGTGTTGATTCTTTCTGTATGTTATAATCTGAC 256146 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| | | || |||| ||| ||||||||||| || | ||||||||||| | || Sbjct 256145 AGAGTTCTTCCATCCTCTAACTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGAGGA 256086 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || |||| | ||| |||| | ||| | || | | ||||| | ||| || Sbjct 256085 ATTCCTTCTTTGT-CTTGAATTTTAGCTTTCACATTCTCTATTGTGTCTGAAGCTTCTAC 256027 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||||||| || || | || || |||||||||||||| Sbjct 256026 TTCTAACGTGATGGTTTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 255979 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||||| | ||||| || | ||| | ||| || || ||||| || || || | Sbjct 255750 ACCTCCTCGGAGTCGCAATACAAGATGGAGTGTTGATTCTTTCTGAATGTTATAGTCTGA 255691 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| | | | || |||| ||| |||||||| || || | ||||||||||| | || Sbjct 255690 CAGAGTTCTCCCATCTTCTAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 255631 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||| ||||| ||| ||| ||| | || | | ||| | | ||| || Sbjct 255630 AATTCCCTCTTTGTCTTGGATCTTTGTTTTCACGTTCTCTATTGTGCCAGAAGCTTCTAC 255571 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| || || | || || |||||||| ||||| Sbjct 255570 TTCCAAGGTGATGGTTTTTCCTGTCAATGTTTTGACAAAGATCTGCAT 255523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543193339401440