Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq190 120 3e-22 seq65 93.3 4e-14 >seq190 Length=691288 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | | ||| || ||||| | | |||||||| |||||||||||||| Sbjct 260297 GCCTCCTCGAAGTCTCAACACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGA 260238 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| | | ||||| | ||||||||| | |||||| ||| || ||||| ||||| Sbjct 260237 AAGAGTTCTCCCATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGG 260178 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| |||| | |||| | || | ||||| | | ||| | Sbjct 260177 AATTCCTTCTTTGTC-TTGAATTTTCGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTA 260119 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||||| || | ||||| || || || ||||| ||||| ||||||||| Sbjct 260118 CCTCGAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCATG 260069 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | | |||||| | ||| | |||| || || |||||||| || || Sbjct 255978 GCCTCCTCGAAGTCTCAAAACAAGATGGAGTGTTGATTCTTTCTGAATGTTATAATCTGA 255919 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| | | ||||| | ||||||||| | |||||| ||| || ||||| ||||| Sbjct 255918 CAGAGTTCTCCCATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGG 255859 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| |||| | ||| | | ||| | ||||| | | || | Sbjct 255858 AATTCCTTCTTTGTCT-TGAATTTTAGCTTTCACATTTTCTATTGTGTCAGAAGCTTCTA 255800 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || ||||| || || ||||| |||||||||||||| Sbjct 255799 CTTCCAAGGTGATGGTCTTACCTGTGAGCGTTTTAACAAAAATCTGCAT 255751 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||||| || ||||| | | || |||||||| || || || || Sbjct 255293 CCGCCACGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCCGAA 255234 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | || || | |||||| || | | | || ||||| ||||| || || || Sbjct 255233 AGAGTTCTCCCATCTTCTAATTGTTTGCCAGCAAAAATCAGACGTTGTTGATCAGGGGGA 255174 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| |||||| |||| | || | ||||| | | ||| || Sbjct 255173 ATTCCTTCTTTGTC-TTGAATTTTTGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTAC 255115 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | ||||| || || || ||||| ||||| ||||||||| Sbjct 255114 CTCAAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCATG 255066 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||||| || ||||| | | || |||||||| || || || || Sbjct 255522 GCCGCCACGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCCGA 255463 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| | | || || | |||||| || | | | || ||||| ||||| || || || Sbjct 255462 AAGAGTTCTCCCATCTTCTAATTGTTTGCCAGCAAAAATCAGACGTTGTTGATCAGGGGG 255403 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| |||||| |||| | || | ||||| | | ||| | Sbjct 255402 AATTCCTTCTTTGTC-TTGAATTTTTGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTA 255344 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||||| || || || ||||| ||||| |||||||| Sbjct 255343 CCTCAAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCAT 255295 >seq65 Length=2871674 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| | ||| | || | ||||| | ||||||||||||||||| || || Sbjct 612243 GCCTCCTCTTAGACGTAGTACAAGATGTAAAGTCGACTCCTTTTGAATGTTATAATCAGA 612302 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||| || ||||| || || | | | || | | ||||||||| ||||| Sbjct 612303 AAGTGTACGTCCGTCTTCTAGTTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGAGG 612362 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| |||||| ||| | | ||| | || || | | || | Sbjct 612363 AATTCCTTCCTTGTC-TTGAATTTTTGCTTTCACGTTTTCAATTGTATCTGATGCTTCAA 612421 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | ||||||||| |||| || || || || ||||||||| Sbjct 612422 CCTCCAGGGTTATCGTTTTACCTGTCAATGTCTTGACGAAGATCTGCATG 612471 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | ||| | ||| | |||| ||||||||||| || || ||| Sbjct 611788 CCTCCTCTCAAACGAAGAACAAGATGCAGAGTTGATTCCTTTTGAATATTATAATCGGAA 611847 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | ||| || |||| | |||| | | || || || || || Sbjct 611848 AGTGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAGATCAATCTTTGCTGATCTGGTGGA 611907 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| |||||| ||| | | ||| | ||| || | || || || Sbjct 611908 ATTCCCTCCTTGTC-CTGAATTTTTGCTTTGACATTTTCAATGGTATCAGACGCTTCAAC 611966 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||| ||||||||||||||||| ||||| Sbjct 611967 CTCCAAGGTAATAGTCTTTCCAGTAAGAGTTTTTACAAAAATTTGCAT 612014 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | |||| ||||| ||||| |||||||| Sbjct 612016 CCACCACGAAGACGAAGTACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAGTCTGAA 612075 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| || | ||| || |||| |||| | | || || || || || Sbjct 612076 AGTGTACGTCCGTCTTCCAATTGCTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 612135 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || |||||||| || ||||||| ||| | | ||| | || || | | ||| || Sbjct 612136 ATGCCTTCTTTATCTTGGATTTTTGCTTTAACGTTTTCAATCGTATCTGAGGCCTCAACT 612195 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||| || | ||||||||||| ||||| || || ||||| |||||| || Sbjct 612196 TCGAGTGTAATTGTTTTACCAGTGAGAGTCTTGACGAAAATTTGCATGCCT 612246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496244621399520