Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq190 105 6e-18 seq65 105 6e-18 >seq190 Length=691288 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | || |||||||||||| | |||||||| || ||||| ||||| || Sbjct 260296 CCTCCTCGAAGTCTCAACACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAA 260237 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| |||| ||||| |||||| |||| || || ||||| || ||||| Sbjct 260236 AGAGTTCTCCCATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGGA 260177 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| |||||| ||| | | || | ||||| | | ||| || Sbjct 260176 ATTCCTTCTTTGTCTTGAATTTTCGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTACC 260117 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | ||||| || || || ||||| ||||| ||||||||| Sbjct 260116 TCGAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCATG 260069 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | |||||| ||||| || | ||||| ||||| |||||||||||||| Sbjct 255065 CCGCCACGAAGTCGCAATACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAATCTGAG 255006 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| |||| ||||| ||||| | ||||| |||||||| || ||||| Sbjct 255005 AGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGCTGCTGGTCTGGAGGA 254946 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| ||||| ||| || ||| || | | ||| | ||||| | | || || Sbjct 254945 ATTCCCTCTTTGTCTTGGATCTT-TGCTTTCACATTTTCTATTGTGTCAGAAGCTTCAAC 254887 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || || | || || ||||| |||||||| Sbjct 254886 TTCAAGAGTAATAGTTTTTCCTGTTAAGGTCTTAACAAAGATCTGCAT 254839 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | || ||| || | ||| | || || ||||| ||||| || ||||| | Sbjct 255977 CCTCCTCGAAGTCTCAAAACAAGATGGAGTGTTGATTCTTTCTGAATGTTATAATCTGAC 255918 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| |||| ||||| |||||| |||| || || ||||| || ||||| Sbjct 255917 AGAGTTCTCCCATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGGA 255858 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTG-AGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || ||||| ||| ||| |||| | | ||| | ||||| | | || || Sbjct 255857 ATTCCTTCTTTGTCT-TGAATTTTAGCTTTCACATTTTCTATTGTGTCAGAAGCTTCTAC 255799 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | || || || || || ||||| |||||||||||||| Sbjct 255798 TTCCAAGGTGATGGTCTTACCTGTGAGCGTTTTAACAAAAATCTGCAT 255751 >seq65 Length=2871674 Score = 105 bits (116), Expect = 6e-18 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || ||||||||||| |||||| | ||||| ||| || | || || || Sbjct 611818 GTTGATTCCTTTTGAATATTATAATCGGAAAGTGTGCGTCCATCTTCCAATTGCTTGCCG 611877 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 || ||||||||| |||||||| || || || |||||||||||| ||| ||| ||| || Sbjct 611878 GCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCCTCCTTGTCC-TGAATTTTTGCTTT 611936 Query 127036 GAGTTGTTCGACGGTGTCCGTACTC-TCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 || | ||| | ||| || | || | || || || | ||| | || || || || |||| Sbjct 611937 GACATTTTCAATGGTATCAG-ACGCTTCAACCTCCAAGGTAATAGTCTTTCCAGTAAGAG 611995 Query 127095 TTTTTACAAAAATCTGCAT 127113 ||||||||||||| ||||| Sbjct 611996 TTTTTACAAAAATTTGCAT 612014 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||||||||| || ||||| | ||||| || || | ||||| ||| Sbjct 610678 GTCGATTCTTTTTGAATGTTATAATCAGAAAGTGTGCGTCCGTCTTCCAATTGTTTGCCA 610737 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 ||| | ||||||| |||||| || || || || || ||||||||| ||| ||| || || Sbjct 610738 GCGAAAATCAATCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCC-TGAATTTTGGCTTT 610796 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | ||| | ||||| | ||| ||||| | ||| | ||||| || || ||||| Sbjct 610797 GACATTTTCAATTGTGTCAGAGGCCTCAACTTCAAGGGTAATAGTTTTACCCGTGAGAGT 610856 Query 127096 TTTTACAAAAATCTGCAT 127113 || || ||||| ||||| Sbjct 610857 CTTAACGAAAATTTGCAT 610874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475483765183840