Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq65 98.7 1e-15 seq190 95.1 1e-14 >seq65 Length=2871674 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||| | || ||||||| || |||||||| ||||| || ||||| Sbjct 611788 CCTCCTCTCAAACGAAGAACAAGATGCAGAGTTGATTCCTTTTGAATATTATAATCGGAA 611847 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || | ||||||||||| || ||||| | ||||| || | || Sbjct 611848 AGTGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAGATCAATCTTTGCTGATCTGGTGGA 611907 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTC-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | | |||||||||| ||| || | | |||| | | | || || || ||| || Sbjct 611908 ATTCCCTCCTTGTCC-TGAATTTTTGCTTTGACATTTTCAATGGTATCAGACGCTTCAAC 611966 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || || || || || || ||||| ||||| |||||||| Sbjct 611967 CTCCAAGGTAATAGTCTTTCCAGTAAGAGTTTTTACAAAAATTTGCAT 612014 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||| | || ||||||| || ||||||||||| || || ||||| Sbjct 611560 CCTCCTCTCAAACGAAGAACAAGATGCAGAGTTGATTCCTTTTGGATGTTATAATCGGAA 611619 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || | || ||||||||||| ||||| | |||||| || | ||| Sbjct 611620 AGTGTGCGTCCGTCTTCCAATTGTTTGCCGGCGAAGATCAATCTCTGCTGATCTGGCGGA 611679 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || || ||| ||||| ||| | || | | ||||| | || || Sbjct 611680 ATACCTTCTTTATCCTGAATCTTGGCCTTAACATTCTCAATTGTGTCAGAAGCCTCAACT 611739 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || |||||||| || || || || || || || |||||||| Sbjct 611740 TCAAGGGTAATGGTTTTACCTGTGAGGGTCTTGACGAAAATTTGCAT 611786 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||||| ||| | || ||||| || || ||||||||| || || || || | Sbjct 612242 TGCCTCCTCTTAGACGTAGTACAAGATGTAAAGTCGACTCCTTTTGAATGTTATAATCAG 612301 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || |||| || || ||||| || || |||||||| | ||| ||||| | | Sbjct 612302 AAAGTGTACGTCCGTCTTCTAGTTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGAG 612361 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCC 46543 | | | ||||||| | ||| || | ||| || | | | || || | ||| Sbjct 612362 GAATTCCTTCCTTGT-CTTGAATTTTTGCTTTCACGTTTTCAATTGTATCTGATGCTTCA 612420 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || ||||| || |||| || || || ||||| ||||| Sbjct 612421 ACCTCCAGGGTTATCGTTTTACCTGTCAATGTCTTGACGAAGATCTGCAT 612470 >seq190 Length=691288 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | ||||| || ||||| | ||| || || || || || ||||| || Sbjct 255749 CCTCCTCGGAGTCGCAATACAAGATGGAGTGTTGATTCTTTCTGAATGTTATAGTCTGAC 255690 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | | || || | ||| || || || || ||||| ||||||||||| | || Sbjct 255689 AGAGTTCTCCCATCTTCTAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 255630 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||| ||||| |||||| | || | || | | ||| | | ||| || Sbjct 255629 ATTCCCTCTTTGTCTTGGATCTTTGTTTTCACGTTCTCTATTGTGCCAGAAGCTTCTACT 255570 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||||||||| || |||| ||||| |||||||| ||||| Sbjct 255569 TCCAAGGTGATGGTTTTTCCTGTCAATGTTTTGACAAAGATCTGCAT 255523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565218150334320