Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq190 116 3e-21 seq65 102 6e-17 seq2840 82.4 5e-11 seq26 82.4 5e-11 >seq190 Length=691288 Score = 116 bits (128), Expect = 3e-21 Identities = 167/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | |||| ||||||||| | || ||| ||||| ||||||||||| | Sbjct 255293 CCGCCACGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCCG-- 255236 Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || | |||| ||| || |||||||| || ||||||| | ||| || ||||| | Sbjct 255235 --AAAGAGTTCTCCCATCTTCTAATTGTTTGCCAGCAAAAATCAGACGTTGTTGATCAGG 255178 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 ||| | ||||||||||| |||||| |||| || ||| |||||||| || Sbjct 255177 GGGAATTCCTTCTTTGTCTTGAATTTTTGCCTTAACATTCTCTATTGTGTCTGAAGCCTC 255118 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCG 39723 || || | |||||| ||||| || || | ||||| || |||||||||||| || Sbjct 255117 TACCTCAAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCATGCCG 255063 Score = 114 bits (126), Expect = 9e-21 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 |||||| || | |||| ||||||||| | || ||| ||||| ||||||||||| | Sbjct 255522 GCCGCCACGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCCG- 255464 Query 39552 CAAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 || | |||| ||| || |||||||| || ||||||| | ||| || ||||| | Sbjct 255463 ---AAAGAGTTCTCCCATCTTCTAATTGTTTGCCAGCAAAAATCAGACGTTGTTGATCAG 255407 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 ||| | ||||||||||| |||||| |||| || ||| |||||||| | Sbjct 255406 GGGGAATTCCTTCTTTGTCTTGAATTTTTGCCTTAACATTCTCTATTGTGTCTGAAGCCT 255347 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || | |||||| ||||| || || | ||||| || ||||||||||| Sbjct 255346 CTACCTCAAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCAT 255295 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 |||||| || | |||| ||||||||| | || ||| ||||| ||||||||||| | Sbjct 260069 GCCGCCACGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGA 260010 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| | | |||| || || ||||| || |||| || || || |||||||| | || Sbjct 260009 CAAAGTTCTTCCATCCTCTAACTGTTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGTGG 259950 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| |||||| |||| | | | |||||| | ||| || Sbjct 259949 AATTCCTTCCTTGTCCTGAATTTTTGCCTTAACATTTTCGATTGTGTCAGAAGCTTCAAC 259890 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | |||||| ||||| || ||||| || || || |||||||||||| Sbjct 259889 TTCAAGAGTAATAGTTTTTCCTGTTAAGGTCTTAACAAAGATCTGCATG 259841 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 |||||| || | |||| |||||| || | ||| |||||| || ||||| ||||| | Sbjct 255066 GCCGCCACGAAGTCGCAATACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAATCTGA 255007 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | | | |||| || |||||||| || ||||||| ||||||||||| || | || Sbjct 255006 GAGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGCTGCTGGTCTGGAGG 254947 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| || ||| ||| | | ||| |||||| | ||| || Sbjct 254946 AATTCCCTCTTTGTCTTGGATCTTTGCTTTCACATTTTCTATTGTGTCAGAAGCTTCAAC 254887 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | |||||| ||||| || ||||| || || || ||||||||||| Sbjct 254886 TTCAAGAGTAATAGTTTTTCCTGTTAAGGTCTTAACAAAGATCTGCAT 254839 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCT--TTCTTTTTGTATATTATAATCG 39549 ||| ||||| | | || ||| | ||| ||||| | |||||| ||||| |||||||| Sbjct 256206 GCCTCCTCGGAGTCTCAATACAAGATG--AAGTGTTGATTCTTTCTGTATGTTATAATCT 256149 Query 39550 GCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAG 39609 | || | | | |||| || || ||||| || | || || ||||||||||| || | Sbjct 256148 GACAGAGTTCTTCCATCCTCTAACTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGA 256089 Query 39610 GGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCC 39669 || | ||||||||||| ||||| ||| | || ||| |||||||| ||| Sbjct 256088 GGAATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTCTCTATTGTGTCTGAAGCTTCT 256029 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || || || || ||||| || || || ||||| || ||||| |||||| Sbjct 256028 ACTTCTAACGTGATGGTTTTTCCTGTCAATGTTTTGACAAAGATTTGCATG 255978 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | |||| ||| | ||| | || |||||| || || ||||| || | | Sbjct 255749 CCTCCTCGGAGTCGCAATACAAGATGGAGTGTTGATTCTTTCTGAATGTTATAGTCTGAC 255690 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| || || ||||| || |||| || ||||||||||| || | || Sbjct 255689 AGAGTTCTCCCATCTTCTAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 255630 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| || ||| ||| | || ||| |||| | | ||| || Sbjct 255629 ATTCCCTCTTTGTCTTGGATCTTTGTTTTCACGTTCTCTATTGTGCCAGAAGCTTCTACT 255570 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCG 39723 ||||| || || ||||| || || || ||||| || |||||||||||| || Sbjct 255569 TCCAAGGTGATGGTTTTTCCTGTCAATGTTTTGACAAAGATCTGCATGCCG 255519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39563 CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622 |||| || |||||||| || | || |||||||| ||||| || | || | ||||||| Sbjct 260226 CATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGGAATTCCTTCTT 260167 Query 39623 TGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 |||| ||||| |||| || ||| |||||||| || || || | ||||| Sbjct 260166 TGTCTTGAATTTTCGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTACCTCGAGAGTAA 260107 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCG 39723 | ||||| || || | ||||| || |||||||||||| || Sbjct 260106 TAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCATGCCG 260066 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| ||||| || || ||||| |||| | | |||| || || || ||||| |||| Sbjct 256398 TTCCTTTTGAATGTTGTAATCCAACAAAGTTCTTCCATCTTCTAACTGCTTCCCAGCAAA 256339 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || ||||| |||||||| | || | ||||||||||| ||||| ||| | | Sbjct 256338 GATCAAACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTT 256279 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 ||| |||||| | ||| || |||||||| || ||||| || || | || || || Sbjct 256278 TTCTATTGTGTCAGAAGCTTCTACTTCCAAAGTGATGGTTTTTCCTGTGAGTGTCTTGAC 256219 Query 39708 GAAGATCTGCATG 39720 ||||| |||||| Sbjct 256218 AAAGATTTGCATG 256206 >seq65 Length=2871674 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||| || || | ||||| ||| ||| ||||| ||||||||||||| Sbjct 611788 CCTCCTCTCAAACGAAGAACAAGATGCAGAGTTGATTCCTTTTGAATATTATAATCGGAA 611847 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| |||| |||||||| || ||| |||| || || | |||||||| | || Sbjct 611848 AGTGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAGATCAATCTTTGCTGATCTGGTGGA 611907 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCAC 39671 | || || ||||| |||||| ||| | | | | || || | ||| ||| || Sbjct 611908 ATTCCCTCCTTGTCCTGAATTTTTGCTTTGACATTTTCAATGGTATCAGACGC-TTCAAC 611966 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| ||||| || || || || | ||||||||| || || ||||| Sbjct 611967 CTCCAAGGTAATAGTCTTTCCAGTAAGAGTTTTTACAAAAATTTGCAT 612014 Score = 100 bits (110), Expect = 2e-16 Identities = 168/242 (69%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 39479 ATATCCAATCATCG-CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGT 39537 |||| |||||| | || ||||| | ||| ||||| | || | ||| ||||||||| Sbjct 610633 ATATGGAATCATTGACCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGA 610692 Query 39538 ATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGC 39597 || |||||||| | | |||| | || ||||||||||| || | ||||| || | | Sbjct 610693 ATGTTATAATCAGAAAGTGTGCGTCCGTCTTCCAATTGTTTGCCAGCGAAAATCAATCTC 610752 Query 39598 TGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTG 39657 ||||| || | ||| | ||||| ||||| ||||| ||| | | | | |||| Sbjct 610753 TGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTTTCAATTGTG 610812 Query 39658 TCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGC 39717 || | | || || || | ||||| ||||||||||| | ||| || ||||| || ||| Sbjct 610813 TCAGAGGCCTCAACTTCAAGGGTAATAGTTTTACCCGTGAGAGTCTTAACGAAAATTTGC 610872 Query 39718 AT 39719 || Sbjct 610873 AT 610874 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||| || || | ||||| ||| ||| ||||| || |||||||||| Sbjct 611560 CCTCCTCTCAAACGAAGAACAAGATGCAGAGTTGATTCCTTTTGGATGTTATAATCGGAA 611619 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| | || ||||||||||| ||| | || || || | ||||||||| | || Sbjct 611620 AGTGTGCGTCCGTCTTCCAATTGTTTGCCGGCGAAGATCAATCTCTGCTGATCTGGCGGA 611679 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||| || || || |||| || | | |||||| | || || Sbjct 611680 ATACCTTCTTTATCCTGAATCTTGGCCTTAACATTCTCAATTGTGTCAGAAGCCTCAACT 611739 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| |||||||| || | || || ||||| || ||||| Sbjct 611740 TCAAGGGTAATGGTTTTACCTGTGAGGGTCTTGACGAAAATTTGCAT 611786 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||| || || | ||| | || || ||||| ||||||||||| | | Sbjct 610876 CCTCCTCTCAAACGAAGAACAAGATGAAGGGTTGACTCCTTTTGGATATTATAATCAGAC 610935 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || ||||| || |||||||| ||| | || || || | ||||||||| | || Sbjct 610936 AATGTACGATCATCTTCTAATTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGTGGA 610995 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||| || || || |||| || | | |||||| | || || Sbjct 610996 ATGCCTTCTTTATCTTGAATCTTGGCCTTAACATTCTCAATTGTGTCAGAAGCCTCAACC 611055 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| |||||||| || | || || ||||| || ||||| Sbjct 611056 TCAAGGGTAATGGTTTTACCTGTGAGGGTCTTGACGAAAATTTGCAT 611102 >seq2840 Length=3276 Score = 82.4 bits (90), Expect = 5e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||||| ||||| || |||||||| || || ||| || || ||||||||||| | | Sbjct 3088 CCGCCTCTTAAACGAAGCACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCAGAC 3147 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 ||| | | |||| ||||||||||| || |||| || || | |||||||||| Sbjct 3148 AAAGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGCTGATCCG 3202 >seq26 Length=4553502 Score = 82.4 bits (90), Expect = 5e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||||| ||||| || |||||||| || || ||| || || ||||||||||| | | Sbjct 253246 CCGCCTCTTAAACGAAGCACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCAGAC 253187 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 ||| | | |||| ||||||||||| || |||| || || | |||||||||| Sbjct 253186 AAAGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGCTGATCCG 253132 Score = 82.4 bits (90), Expect = 5e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||||| ||||| || |||||||| || || ||| || || ||||||||||| | | Sbjct 264828 CCGCCTCTTAAACGAAGCACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCAGAC 264887 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 ||| | | |||| ||||||||||| || |||| || || | |||||||||| Sbjct 264888 AAAGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGCTGATCCG 264942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347357466596978