Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq78 374 1e-98 seq21 221 2e-52 seq44 154 2e-32 seq27 145 1e-29 seq155 82.4 1e-10 >seq78 Length=788090 Score = 374 bits (414), Expect = 1e-98 Identities = 884/1321 (67%), Gaps = 17/1321 (1%) Strand=Plus/Minus Query 6496 TTCGACCGTTCCTTTCATTTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTT 6555 ||| || || | ||||| | | | ||||| |||||||||||||| || ||| | Sbjct 410537 TTCCACTGTGCTCTTCATGTTAAAGCAGTAAGACTCGAGACCATTCTTAGCAGCGATAGT 410478 Query 6556 TTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAAT 6615 || | ||| ||||| || ||| || || || || | |||||| | ||||| Sbjct 410477 TTCTTTTTGCTTCTCATCCTCGCTACGATATTTCTCAGCTTCATTGACCATTCTCTCAAT 410418 Query 6616 GTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGA 6675 |||||||| | | || |||||||| ||||| ||||| || | || || | Sbjct 410417 ATCTTCTTTACTGAGACGGCCTTTATCATTGGTAATAGTAATTTTGTTCTCCTTGCCAGT 410358 Query 6676 GGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATT 6735 | ||||| | || || || | ||||||||| ||||||| |||||| | || | Sbjct 410357 AGATTTATCCACTGCCGAAACGTTTAGAATACCATTGGCATCAATATCGAAGGTGACTTC 410298 Query 6736 AATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAA 6795 ||| || || || | || || | ||||||||| | | |||||| |||| | || Sbjct 410297 AATCTGAGGAACTCCACGAGGAGCTGGTGGAATACCACTGAGCTCAAATTTACCCAACAA 410238 Query 6796 ACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTG 6855 |||||||| | | | || |||||| ||||| ||||||| ||| || | ||||| Sbjct 410237 GTTGTTATCCTTAGTCATCGCACGTTCTCCTTCGTAGACTTGAATCAATACTCCTGGTTG 410178 Query 6856 ATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGG 6915 |||||| ||| | ||| | || || || | |||||| || || ||||| Sbjct 410177 ATTATCAGCATACGTAGTGAAAGTCTGAGTTTGTTTGGTTGGAATAGTAGTGTTTCTTTT 410118 Query 6916 AATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTC 6975 || | | ||||||| ||||| |||||| | ||||||||||| |||||| || || Sbjct 410117 GATGAGGGCCGTCATAACGCCACCAGCAGTTTCAATTCCAAGAGACAAAGGTGTTACATC 410058 Query 6976 CAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGAC 7035 | || || | |||||| || ||| | || || || || |||||||| || Sbjct 410057 AAGAAGCAATAAGTCTTGTACTTCTTCAGACTTGTCGCCATGTAGAATAGCGGCTTGTAC 409998 Query 7036 CGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTT 7095 | || || || || || || |||||||| || || | |||||||| ||| || ||||| Sbjct 409997 AGCAGCTCCATAAGCTACAGCTTCATCGGGATTGATAGATTTATTCAATTCCTTCCCGTT 409938 Query 7096 AAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAAC 7155 || |||| |||| || ||| || || || || ||||| |||||||| |||| ||| Sbjct 409937 GAAGAAATCTTGCAACAATTTTTGGATCTTAGGAATACGTGTAGATCCACCAACCAGAAC 409878 Query 7156 GATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTC 7215 ||| || | | | | |||||| || || | ||| || | | ||||| || || || Sbjct 409877 GATATCGTGAATCTGAGCTTTATCCATTTTAGCGTCACGCAACGACTTTTCCACTGGCTC 409818 Query 7216 CATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGT 7275 || | | ||| | || ||| || || || || || || | ||| || || || Sbjct 409817 CAGTGTTCCTCTGAAGAGATCAGCACAGAGCTCTTCGAATCGAGCTCTGGTGATTGAAGT 409758 Query 7276 ATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA 7335 ||||||||||| || || || | ||||||||||| || | | ||| | | |||||| Sbjct 409757 ATAGAAATCAATTCCCTCATAGAGTGAATCAATTTCGATACTAGCTTGAGTAGACGAAGA 409698 Query 7336 TAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACC 7395 || || || || || ||||| || || |||| ||||| || || || || ||| | Sbjct 409697 CAAAGTACGTTTCGCACGCTCGCAGGCTGTTCTCAAACGGCGGAGAGCGCGTTTGTTTGC 409638 Query 7396 GGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCT-CG 7454 | | |||||||||| || || || || || | | || | || || | || Sbjct 409637 AGTCAGGTCTTTCTTATACTTCCGCTTGAATTCCTGAACAAAAT---GATTGACCATACG 409581 Query 7455 A--ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGAT 7512 | ||||||||||| || || | || ||||| || || || | ||| || || || || Sbjct 409580 ATTGTCGAAATCTTCGCCGCCAAGATGAGTATCTCCTGCTGTTGATTTAACCTCGAAAAT 409521 Query 7513 ACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAG 7572 || |||| ||| | || | || ||||| || || |||||||| ||||||||||| || Sbjct 409520 GCCATCTTCGATGGTCAAAATTGAGACATCGAAGGTGCCACCACCAAGGTCAAAAATTAG 409461 Query 7573 TACGTT-CGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 ||||| ||| ||| |||| || ||||| || | || ||||| || || || || || Sbjct 409460 GACGTTGCGT-TCGCTCGTAGTT-TTCTTGTCCAAGCCATACGCAATGGCGGCAGCAGTG 409403 Query 7631 GGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689 || || || || ||||| || ||| |||| || | ||||| | || || || || || Sbjct 409402 GGCTCGTTGATGATACGTAAAACA-TTCAAACCCGAGATAGTACCAGCGTCCTTGGTTGC 409344 Query 7690 TTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT 7749 || || ||||| ||||| ||||| || || || || | || || | |||| |||| Sbjct 409343 CTGACGCTGCGAGTCGTTGAAGTAAGCAGGCACAGTGATCACGGCATTGCTGACAGTCTT 409284 Query 7750 ACCGAGATACGATTCCGCGATATCTTTCAT-TTTGGTAAGAACCATCGATGAAATCTCTT 7808 |||||||| | || || | || ||||| ||| ||| ||||| |||| || ||| Sbjct 409283 GCCGAGATATGCCTCAGCAGTTTCCTTCATCTTTACCAAG-ACCAT---TGAACTCACTT 409228 Query 7809 C 7809 | Sbjct 409227 C 409227 >seq21 Length=3094869 Score = 221 bits (244), Expect = 2e-52 Identities = 468/698 (67%), Gaps = 8/698 (1%) Strand=Plus/Minus Query 7118 TGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTA 7177 |||||||| || || | || || || ||||| | |||||| | || | | || Sbjct 1898294 TGAATTTTTGGTATCCTGGTAGACCCGCCGACTAGAACGATACTGTGAACATGAGCCTTG 1898235 Query 7178 TCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCC 7237 || || || | ||||| | | || || || ||||||| | | ||| | ||| Sbjct 1898234 TCCATTTTAGCGTCTCTCAAAGCCTTCTCAACCGGTTCCAATGTGCTTCTGAATAGATCC 1898175 Query 7238 ATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTAT 7297 || ||||| || || | || | ||| || ||||| |||||||||| ||| ||| | Sbjct 1898174 GCGCAAAGTTCTTCGAATCTGGCTCTGGTGATCGATGTGTAGAAATCAATGCCCTCGAAA 1898115 Query 7298 AACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCA 7357 | ||||| ||||| || | | ||| | | |||| || |||| ||| || | || Sbjct 1898114 AGAGAATCTATTTCGATACTGGCTTGCGTTGACGAACTCAATGTTCTCTTAGCCCTTTCG 1898055 Query 7358 CACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTA 7417 || || |||| | || | ||| || | | || | | || ||||| | ||| Sbjct 1898054 CATGCGGTTCTCAGTCGCCTAAGTGCCCTCTTATTCGAGCTTAAGTCCTTCTTGTATTTC 1897995 Query 7418 CGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477 | || ||||| | | |||||| | | || ||||| ||||||||||| | | Sbjct 1897994 CTCTTGAACTCCTGAACGAAGTGATTTACCATTCGATTGTCGAAGTCTTCACCACCGAGG 1897935 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 || || || || || |||| ||||||||||||||| || ||||||| | || | || Sbjct 1897934 TGAGTGTCGCCTGCCGTCGATTTGACTTCAAAGATGCCATCTTCAATAGTCAAAATGGAG 1897875 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATC----GTCGTCTTT 7593 ||||| || || ||||| |||| ||||||||| | ||||||| | || | | |||| Sbjct 1897874 ACATCGAAGGTGCCACCTCCCAAGTCAAAAATCAATACGTTCTTCTCTCCTGAAGACTTT 1897815 Query 7594 GTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA 7653 ||||| | ||| || || || |||||||| ||||| || || || || | | | Sbjct 1897814 ----TTATCTAAACCATAAGCTATCGCCGCCGCGGTTGGCTCGTTGATTATTCTCAAAAC 1897759 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 ||| | ||| | || | | |||||||||| || ||||||| || || || || ||||| Sbjct 1897758 GTTTAAGCCTGATATTGCTCCCGCATCTTTGGTGGCTTGTCTCTGAGAGTCATTGAAGTA 1897699 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 || || || || | ||| |||| ||||| |||| || | ||||| || || | || Sbjct 1897698 TGCGGGAACGGTGATGACAGCGTTGGTGACAGTCTTTCCTAAATACGCCTCTGCTGTTTC 1897639 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 |||||| || ||||| |||||||| || | ||||||| Sbjct 1897638 TTTCATCTTCGTAAGTACCATCGAAGATACTTCTTCAG 1897601 Score = 102 bits (112), Expect = 1e-16 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 |||| ||||| || |||||||| || ||||| || |||||||| ||||| || | | Sbjct 1896469 AAAATGGTGTTGTTCGGGTTCATCGCGACCTGGTTTTTGGCCGCGTCGCCGATCAGTCTT 1896410 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | | |||| || ||||| || || ||||||||||| ||||| || || ||| Sbjct 1896409 TCTGTGT---CCGTGAAGGCGACATAACTCGGTGTCGTTCGATTTCCTTGATCATTTGCA 1896353 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCA 8137 || || || || | | ||| | || |||||||| |||||||| || || || ||| Sbjct 1896352 ATGATCTCGACTTTTCCATGTTGGAAAACACCGACGCAGGAATACGTGGTGCCCAAGTCA 1896293 Query 8138 ATACCGATTGCTTGAGTCATTTTATATATTTT 8169 || || | |||| ||| | || | ||||||| Sbjct 1896292 ATTCCAACTGCTGGAG-CTTTCGACATATTTT 1896262 >seq44 Length=3076595 Score = 154 bits (170), Expect = 2e-32 Identities = 202/277 (73%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 7534 CGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTT 7593 ||| || || || || ||||| || || || || || || |||||| | ||| || | Sbjct 2015704 CGATACGTCGAAAGTGCCACCGCCGAGATCGAAGATCAGAACGTTCCTTTCGCCGCGTCC 2015645 Query 7594 GTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-AC 7652 || || ||||| ||||| || |||||||| || || || || ||||| || | || || Sbjct 2015644 CTTTTTGTCGAGGCCGTAAGCAATAGCCGCGGCAGTCGGCTCGTTAATGATCCTCAGGAC 2015585 Query 7653 AGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712 | |||||||| | ||||| | || || || ||||| || || || || ||||| |||| Sbjct 2015584 A-TTCAGGCCGGAGATAGTACCGGCGTCCTTGGTCGCCTGCCGCTGGGAGTCGTTGAAGT 2015526 Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772 | ||||| ||||| | ||||||| |||||| ||| || | ||| | |||||| | | Sbjct 2015525 ACGCCGGTACCGTAATCACCGCGTTCGTGACGGACTTGCCCAAATAAGCTTCCGCCGTTT 2015466 Query 7773 CTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 | ||||| || || ||||||||||| || ||||| || Sbjct 2015465 CCTTCATCTTCGTCAGAACCATCGACGAGATCTCCTC 2015429 Score = 93.3 bits (102), Expect = 5e-14 Identities = 147/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 11444 TTTTCTTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTG 11503 ||||||| |||| ||||| ||||| || || || | ||||| ||| | || |||| Sbjct 868508 TTTTCTT-CCAACGGCATCGATTTCGTCAATGAATAATATACATGGTGCGTGTTTCCGTG 868450 Query 11504 CCAATTCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACG 11563 |||| | || ||||| || |||||| || || || || ||||||||||| | || Sbjct 868449 CCAACGCGAACATATCTCGAACTCTTGATGGACCAACACCAACAAACATTTCCAAAAATT 868390 Query 11564 ATGACCCCGA-ACACTGAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAA 11622 || || || ||||| ||||||||| || | |||||| || |||| ||||| Sbjct 868389 CAGAACCTGATACACT-AATAAAAGGTACATTTGCTTCACCAGCAGTAGCTTTAGCTAAT 868331 Query 11623 AGTGTTTTACCTGTACCTGGTTTACCT 11649 | ||||||||| ||||| ||| |||| Sbjct 868330 AATGTTTTACCAGTACCCGGTGGACCT 868304 >seq27 Length=464375 Score = 145 bits (160), Expect = 1e-29 Identities = 198/274 (72%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 6640 ATCATTCGTAATCGTAATCTTTTCG-GATTTACCCGAGGCCTTATCTTCAGCACTTACAT 6698 ||| || ||||| ||||||||| ||||| || | | || || |||||| || | Sbjct 134602 ATCGTTGGTAATAACAATCTTTTCTCGATTT-CCAGTTCCTTTGTCCTCAGCAGACACTT 134660 Query 6699 TCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTG 6758 | |||||| || ||||| | || || | || | |||||||||| |||||| |||| Sbjct 134661 GTAGAATACCGTTAGCATCGATTTCAAAGGTAACTTCAATTTGTGGTATACCCCGTGGTG 134720 Query 6759 CGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTAC 6818 | | |||||| || || | ||||||| ||||||| | | |||||| | | | || || Sbjct 134721 CTGGTGGAATGCCAGTAAGATCAAATTTACCAAGAAGATGGTTATCTTTTGTCATCGGAC 134780 Query 6819 GTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGA 6878 ||||||||||||| |||| || || || | | ||||||||||| ||| || ||||||| Sbjct 134781 GTTCACCTTCATATACTTGGATAGTTACTGTATGTTGATTATCTGATGCAGTAGAGAAGA 134840 Query 6879 TTTGTTCTTTCTTAGATGGAATCGTCGTATTTCT 6912 |||| ||| || | |||||| |||||||| Sbjct 134841 TTTGCGATTTTTTGGTCGGAATCACGGTATTTCT 134874 >seq155 Length=3151304 Score = 82.4 bits (90), Expect = 1e-10 Identities = 152/222 (68%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 183361 TGTACCAAATTGACCACATGGTTCGAGTAAATTAATATTATTCGACCCCGTAAAATTATG 183420 |||||||||||||||| |||| |||||||| |||||||| || ||||| || Sbjct 3004342 TGTACCAAATTGACCAATCGGTTGAAGTAAATTTATATTATTACTTCCAACGAAATTTTG 3004283 Query 183421 TGCTAATTTTACAATTGTATCTGCCAAA---GAGACTTCACCGTGGTGATACGATGTTTT 183477 ||| | || | ||||| || || | ||||||||||| |||||||| | | | Sbjct 3004282 TGCAAGATTAATGATTGT---TGACATAAGAGAGACTTCACCATGGTGATATGCAGAATG 3004226 Query 183478 TTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTCAGATGTAAGATTCTTTGTGAA 183537 ||| | || | | |||||||| ||||| || | |||| || ||| | | || Sbjct 3004225 TTCAGCTACAGAACCAGCTAATTGTGCAACTTTTACTTCACGCTTATCATTACGTTTCAA 3004166 Query 183538 ACACGCGTATAACACTTTTCGTTGGGATGGTTTTAAACCATC 183579 ||| | |||| |||||| | ||| ||||| |||||||| Sbjct 3004165 ACATGTATATACCACTTTCCTTTGTCCAGGTTTAAAACCATC 3004124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635110046367440