Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq218 93.3 5e-14 >seq218 Length=400417 Score = 93.3 bits (102), Expect = 5e-14 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 159539 TGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGAC 159598 |||| ||| | ||||| || |||||||| || | || || ||||| | ||| Sbjct 237949 TGTCTTGTTTGATGATAACGTATCCATCAACGAACGGCGTGTTTGAGGAGACTATCGCTG 237890 Query 159599 AGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAA 159658 | || ||| || |||||||| |||||||||||| ||| | || || || ||| | | Sbjct 237889 ATATTTGTGCTATGGTTCATGAAGTTGGTGGTCAGGTGTATTTAGACGGGGCTAATATGA 237830 Query 159659 ATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACT 159718 |||| || || |||||| || |||| ||||| || || | ||||| || | Sbjct 237829 ATGCCCAAGTTGGTCTATGTCGTCCTGGTGATTATGGCAGCGACGTTTCACATCTGAATT 237770 Query 159719 TACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTG 159778 |||| || || || || || || || || ||||| || ||||| | || |||||||| | Sbjct 237769 TACACAAAACGTTTTGCATACCTCACGGCGGTGGTGGACCTGGAATGGGACCTATTGGAG 237710 Query 159779 T 159779 | Sbjct 237709 T 237709 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 158569 GCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGT 158628 || ||| | ||||| || || || | || ||||||||||| ||||| || || ||||| Sbjct 239310 GCGTACCGCTTAGCTCTTCAAACACGTGAACAGCATATCAGGAGAGATAAGGCTACCAGC 239251 Query 158629 AACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCAT 158688 ||||| || || ||||||||| ||||||| || ||||||| | ||||| | ||||| Sbjct 239250 AACATTTGTACCGCACAAGCATTGCTGGCAAACATGTCTGCAATGTATGCCGTGTATCAC 239191 Query 158689 GGTGCAGATGGACTA 158703 || | || ||| || Sbjct 239190 GGGCCTGAGGGAATA 239176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588030133065760