Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq190 113 3e-20 seq65 113 3e-20 >seq190 Length=691288 Score = 113 bits (124), Expect = 3e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||||| || |||||||||||| || || || || || ||| | |||| Sbjct 255051 CAATACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAATCTGAGAGAGTTCTTCCATC 254992 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || | ||||| || ||||| || | || ||||||||| | || | ||||| ||||| Sbjct 254991 TTCTAATTGTTTACCAGCAAAAATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTC 254932 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||| || | |||| | ||| || ||||| || | || || || Sbjct 254931 TTGGATCTTTGCTTTCACATTTTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGT 254872 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAGA 34990 |||||| || | ||||| ||||||||||||||| | ||||| Sbjct 254871 TTTTCCTGTTAAGGTCTTAACAAAGATCTGCATAATTGTAGA 254830 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||||||||||||||| || || ||| |||| || | |||||| || ||||| Sbjct 255714 TTCTTTCTGAATGTTATAGTCTGACAGAGTTCTCCCATCTTCTAACTGTTTACCAGCAAA 255655 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || ||||||||| | || | ||||| ||||| ||||| ||| ||| Sbjct 255654 GATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCTTGGATCTTTGTTTTCACGTT 255595 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 |||| | || || || || || | ||| ||||||||||| || | || || || Sbjct 255594 CTCTATTGTGCCAGAAGCTTCTACTTCCAAGGTGATGGTTTTTCCTGTCAATGTTTTGAC 255535 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 255534 AAAGATCTGCAT 255523 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| ||||| || | || || ||||||||||| ||||||||||| ||| || Sbjct 260284 CTCAACACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTTCTCCCA 260225 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || | ||||| || || || |||| ||||||||||| | || | || || ||| Sbjct 260224 TCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGGAATTCCTTCTTTG 260165 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||| ||| || || |||| | || ||||| || |||| || || Sbjct 260164 TCTTGAATTTTCGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTACCTCGAGAGTAATA 260105 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| ||||| || || |||||||||||||| Sbjct 260104 GTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCAT 260070 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 |||||||| | || | ||| |||||||||||||||||| || || || ||| || Sbjct 255965 CTCAAAACAAGATGGAGTGTTGATTCTTTCTGAATGTTATAATCTGACAGAGTTCTCCCA 255906 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || | ||||| || || || |||| ||||||||||| | || | || || ||| Sbjct 255905 TCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGGAATTCCTTCTTTG 255846 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||| || ||| || | |||| | ||| || || || || | ||| ||| Sbjct 255845 TCTTGAATTTTAGCTTTCACATTTTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTGATG 255786 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| || || ||||| ||||||||| Sbjct 255785 GTCTTACCTGTGAGCGTTTTAACAAAAATCTGCATA 255750 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 || ||||| || || | ||| ||| || |||||||| || ||| | | ||| | || Sbjct 256421 CTTAAAACTAAATGGAGTGTAGATTCCTTTTGAATGTTGTAATCCAACAAAGTTCTTCCA 256362 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || | ||| || || ||||| || | |||||||| || | || | || || ||| Sbjct 256361 TCTTCTAACTGCTTCCCAGCAAAGATCAAACGTTGCTGATCAGGAGGAATTCCTTCTTTG 256302 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||| || ||| ||| | |||| | ||| || || || || | || ||| Sbjct 256301 TCTTGAATTTTAGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCTACTTCCAAAGTGATG 256242 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| ||||| ||||| |||||||| ||||| Sbjct 256241 GTTTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 256207 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| || | |||| ||| ||||||||| |||||||| || || || ||| | || Sbjct 256193 CTCAATACAAGATGAAGTGTTGATTCTTTCTGTATGTTATAATCTGACAGAGTTCTTCCA 256134 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || | |||||| || || || || | || ||||||||| | || | || || ||| Sbjct 256133 TCCTCTAACTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTG 256074 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||| || ||| || |||| | || || || || || | || ||| Sbjct 256073 TCTTGAATTTTAGCTTTCACATTCTCTATTGTGTCTGAAGCTTCTACTTCTAACGTGATG 256014 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| || | || || |||||||| ||||| Sbjct 256013 GTTTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 255979 >seq65 Length=2871674 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| ||||||||||| || ||||| | ||| | || |||| ||||| || || || Sbjct 610683 TTCTTTTTGAATGTTATAATCAGAAAGTGTGCGTCCGTCTTCCAATTGTTTGCCAGCGAA 610742 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || ||||||||| | || | || |||||||| ||| || |||||| Sbjct 610743 AATCAATCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATT 610802 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| ||||||||| || | ||| || ||||| |||||||||||||| || Sbjct 610803 TTCAATTGTGTCAGAGGCCTCAACTTCAAGGGTAATAGTTTTACCCGTGAGAGTCTTAAC 610862 Query 34970 AAAGATCTGCAT 34981 || || ||||| Sbjct 610863 GAAAATTTGCAT 610874 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || ||||| ||||| || ||||| | ||| |||| |||| || || |||||||| Sbjct 611823 TTCCTTTTGAATATTATAATCGGAAAGTGTGCGTCCATCTTCCAATTGCTTGCCGGCAAA 611882 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || |||||| ||| | || | ||||||||||| ||| || |||||| Sbjct 611883 GATCAATCTTTGCTGATCTGGTGGAATTCCCTCCTTGTCCTGAATTTTTGCTTTGACATT 611942 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| || ||||| || | ||| || || ||||| || ||||| || || Sbjct 611943 TTCAATGGTATCAGACGCTTCAACCTCCAAGGTAATAGTCTTTCCAGTAAGAGTTTTTAC 612002 Query 34970 AAAGATCTGCATA 34982 ||| || |||||| Sbjct 612003 AAAAATTTGCATA 612015 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || ||||||||||| || ||||| | ||| | || || || || ||||| |||||| Sbjct 612280 TCCTTTTGAATGTTATAATCAGAAAGTGTACGTCCGTCTTCTAGTTGCTTTCCAGCAAAT 612339 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || || |||||| | || | || |||||||| ||| || ||| ||| | Sbjct 612340 ATCAATCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTT 612399 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||||| || | |||||| ||||| || || | ||||| || Sbjct 612400 TCAATTGTATCTGATGCTTCAACCTCCAGGGTTATCGTTTTACCTGTCAATGTCTTGACG 612459 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 612460 AAGATCTGCAT 612470 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| |||||||| || ||||| ||||| | ||| | || |||| || || ||||| || Sbjct 612051 TTCCTTCTGAATATTGTAGTCTGAAAGTGTACGTCCGTCTTCCAATTGCTTGCCGGCGAA 612110 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || |||||| ||| | || | || || || || || || ||| ||| Sbjct 612111 GATCAATCTTTGCTGATCTGGTGGAATGCCTTCTTTATCTTGGATTTTTGCTTTAACGTT 612170 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | |||| || ||||||||| |||| || || ||||| || ||||||||||| || Sbjct 612171 TTCAATCGTATCTGAGGCCTCAACTTCGAGTGTAATTGTTTTACCAGTGAGAGTCTTGAC 612230 Query 34970 AAAGATCTGCAT 34981 || || ||||| Sbjct 612231 GAAAATTTGCAT 612242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324622260751248