Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq64 183 3e-41 seq25 141 1e-28 >seq64 Length=2955609 Score = 183 bits (202), Expect = 3e-41 Identities = 216/294 (73%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 47247 ttttctataattttgttttttaattcatttgaccaaagttttcgttcagtta-atgtttt 47305 ||| ||||||||| |||||| | || | |||||| | || |||||||| || | | Sbjct 1698007 TTTGCTATAATTTCGTTTTTCATGTCCTCATCCCAAAGATCTCTTTCAGTTAGATCTCGT 1697948 Query 47306 taaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATT 47365 | ||| ||||| || |||||||| ||||||||||| || ||||| | ||| ||||| Sbjct 1697947 AATAAG-TGAGGGTTTACAATTTGGAATTCTCCAGACAGAACTCTTCTTGCATAAATATT 1697889 Query 47366 ACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGG 47425 || |||||||||||||| |||||||||||||| |||||||| ||||| |||||||| || Sbjct 1697888 GCTGGTATATGGTTCTATGGATTCATTATTTCCTAAAATTTGTGCAGTAGATGCTGTTGG 1697829 Query 47426 CATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNG 47485 ||| | ||||| || ||| |||||| | ||||| ||| || | Sbjct 1697828 CATAGGTGCAATTAGTAAAGAATTTCTAATTCCATGTTTAGCAATTTTTTCTTTCAAAAT 1697769 Query 47486 TTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539 | |||||| ||| | ||| | |||| ||||||||| | ||||||||| | ||| Sbjct 1697768 TGTCCAATTCCATAAATCAGTTGGAGTAACATTCCACATATCATATTGTAAAAT 1697715 Score = 154 bits (170), Expect = 2e-32 Identities = 223/312 (71%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 48270 TTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAA 48329 || ||| |||| ||||||| || | ||| || | ||||| |||||||||||||| ||| Sbjct 1696663 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCCAAA 1696604 Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389 ||||| || | | | ||||||| |||||| ||||||||||| | ||| | || || || Sbjct 1696603 TATATAGCAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATACCGAGCTGTGTTA 1696544 Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449 || || ||||| | |||||| | | |||||| |||| |||| || || | || Sbjct 1696543 TTGTATACTCTGATCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 1696484 Query 48450 CTTCCACTAGCTCTTATATTA-CTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 | || | |||| ||| | || | || | || |||||||| || |||| || Sbjct 1696483 GTACCTTTTGCTCGAATACAATGTACATTAAGT-CCAATACCACCAGCTGATTTACTAAT 1696425 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568 || ||||| | ||| | ||||||||||||||||| || |||||||| |||| ||| Sbjct 1696424 AAGTGCACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCATCACTCATTGTTAG 1696365 Query 48569 TAGAAAACAACT 48580 || ||| ||||| Sbjct 1696364 TAAAAAGCAACT 1696353 Score = 134 bits (148), Expect = 2e-26 Identities = 199/281 (71%), Gaps = 2/281 (1%) Strand=Plus/Minus Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 |||||||||||| | | | ||| | || | ||| | |||||||||||||||| |||| Sbjct 1696286 CTAGACATTTGCTGTCGTCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGAGTAAAA 1696227 Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATA 48698 | |||||||| || || |||||||| ||||| ||| ||||| ||| ||| Sbjct 1696226 TAACGTTCTGATAAAAAGTTGTATGTTTCTATAACTTTATCAATATCTTCACCATGGATA 1696167 Query 48699 CCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTC 48758 | | | || | ||||| ||||| ||| ||||||||||||| ||| || ||| || Sbjct 1696166 GCAACTGCAACTCTCATTAGCATATGTTGTGGTCTTTCAACAACTTTCCCATGTATCTTT 1696107 Query 48759 AAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCA 48818 || | ||| ||| || | ||| ||||||||||| || || || ||| || ||||| Sbjct 1696106 AATAAATAACTTTTCTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAATCTCTATCA 1696047 Query 48819 TTAATAATTGATGAATTTA--TTCTTTCCTTATGTTTATAT 48857 | ||| |||| ||||||| || ||| | | | ||| ||| Sbjct 1696046 TAAATTATTGCGGAATTTAATTTATTTGCATTTTTTTGTAT 1696006 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| ||||| |||||||| ||| | ||| | | |||| | ||||||| || Sbjct 1698288 TCCAGCCATAAAAATGCATTGAAGTCAGTTTTTCTGTAGTTGGTTTAGCCATATGAACAT 1698229 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | || || ||||| ||||||||||||| ||| |||||||| | ||| || || Sbjct 1698228 TTAATGACTGTGATTGATCTATAAATGCACCTCGATCTGCTGCCATTTTTAAGATTACTT 1698169 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAA 47199 |||||||||| ||||| ||||||||||||| Sbjct 1698168 TTTGTGGTATTTCCCACACTGTTTTATAAA 1698139 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/147 (75%), Gaps = 7/147 (5%) Strand=Plus/Minus Query 48916 CACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATA 48975 ||||||| ||||| |||||||||||||||||||||| | | |||| |||||||||| Sbjct 1695832 CACTAAAACTTTTTGTTGTTTCTTTATGAAGATTAGAGACTGCAATTCGTGCAGCTAATA 1695773 Query 48976 TAGCATAATCTGGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTA 49035 | |||||||||||||| | | ||| || || | |||| ||||| | | || | Sbjct 1695772 TCGCATAATCTGGATG---TTTAGTA---GTGCT-GCAGTTTCAGCTGCAAGATTGTCCA 1695720 Query 49036 ATTCTTTAGTAGTTACACCTGTATATA 49062 |||| ||||||||||||| |||| Sbjct 1695719 ATTCAACGGTAGTTACACCTGAGTATA 1695693 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924 |||||| |||| | || || || || | |||||| ||||| | |||| |||| | | | Sbjct 1697228 ACAAACATATTGACCGCGATTGAAGCCAAATTACACACAGCGATTTCATCTGGACTGGAA 1697169 Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT- 47983 | |||| ||||| | ||| | ||||| || |||||| || || | |||||||||||| Sbjct 1697168 AACTGTACGATTTCTGTACACAAATTACTACTTTTGATTGTTCCTATATTTTGATGATTT 1697109 Query 47984 -ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAG 48042 ||| || || || || ||||||||| |||| ||||| ||||| | |||| Sbjct 1697108 GATTTACG--ATTGCAATGATCTTTATAAAGCATATAAGGAGTTCCTGTTTCAACTTGAG 1697051 Query 48043 ATTCAATGATAGATTTCCA 48061 ||| |||| | |||| Sbjct 1697050 CGACAAGAATAGCTGTCCA 1697032 >seq25 Length=3544016 Score = 141 bits (156), Expect = 1e-28 Identities = 141/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 19233 ATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAA 19292 ||||| ||| || |||||| ||||||||||| || | |||||| || || || ||||| Sbjct 2908036 ATATGTATCAATTAATAAAGAATACATTTCTGAGTGTACATTTTCCATGGCGATTTGAAA 2908095 Query 19293 TCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATT 19352 || || || || | |||||||||||| |||||||| || ||||| |||||| | ||| Sbjct 2908096 GCCATAGAAGCAACGTGCTTCTGTTATTTGTACTTCTTGACTAAATCGTTCGACGAGATT 2908155 Query 19353 TTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTT 19412 ||||| || ||||||||| ||| ||||| |||||||| || | ||||||||||| Sbjct 2908156 CTCATTGACAATTCCATCAGAAGCGGCAAAGAATGCTAAGACGTAAGATATAAAATGTTT 2908215 Query 19413 TTC 19415 || Sbjct 2908216 CTC 2908218 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834 |||||||| | |||| || || || ||||||| |||||| ||| | | |||| Sbjct 2907293 CCTAATTCAATAAGTAACCTGTCAGCAACAAATTCGATATATTGACACATAAGTTTACAA 2907352 Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 ||||||||||| | || |||||||| ||||| || | |||||||||||| || || || Sbjct 2907353 TTCATTCCTATCATTTCAACAGGTAAGGCATCCGTTAAAAATTCTTGTTCAATTTTGACA 2907412 Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAAC 18954 || ||| ||||| ||| |||| || | || | || || ||||| ||| Sbjct 2907413 GCATCTTTAATAATTGATGTGACTCGTTCGGAAGATGGTTTTTGTATAATGTGTTTGAAC 2907472 Query 18955 ATCAAACATGCAAAATCACAATGTAGTCCCT 18985 || |||||||| ||||||||||||||||||| Sbjct 2907473 ATTAAACATGCGAAATCACAATGTAGTCCCT 2907503 Score = 109 bits (120), Expect = 6e-19 Identities = 159/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || |||||| || | |||||| |||||| | || ||||| || ||||||||||| Sbjct 2907697 TCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCCGGCATAAGACCTCTTTTTTTC 2907756 Query 19045 AACCAGAATATAGAAGCAAA--TGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 |||||||| |||| |||||| || | ||||| |||||||||| ||||| ||||| | Sbjct 2907757 AACCAGAAAATAGCAGCAAAACTGCCGCTGAAAA--ATATACCTTCCACTGCAGCAAATG 2907814 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 |||||| | ||| | | ||| | || | ||||| || | |||||| | || Sbjct 2907815 CAACTACACGTTCAGGGAACGTGGCACTTTCATGGTTTATCCAATTTAATGCCCACTGAG 2907874 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 | || ||| | |||||||| | |||| || | ||||||||| Sbjct 2907875 CTTTTTTTGTAACACATGGTAAATTCTCAATTGCATTAAATAG 2907917 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 19425 TAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGA 19484 |||| |||| | ||||| || ||||||| | ||| ||||| || || ||||||||||| Sbjct 2908294 TAATCTATTTGAGGCATTA-TA-CTTTAGAGAGATCCACTTCCTCCACAGTCCAAAAAGA 2908351 Query 19485 AGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 || || |||||||| ||||| | ||| || ||| | |||| ||||| || | |||||| Sbjct 2908352 GGCTTCCGCTTTTTTGTACATTTGCCAAATGTCAGGCCATTGAATAGGGAAAACAACAAA 2908411 Query 19545 TCTATTTTTATTTTCTTTAAGAATAGGTTC 19574 ||| | ||||||||| || | ||||| Sbjct 2908412 CCTACGTGGATTTTCTTTCAGTAATGGTTC 2908441 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 |||||||||| ||| |||||||| | || ||||||| || ||||| ||||| || || Sbjct 2907100 CATTACTCCCCATTTCTGATATTCTCCCACCTTTTTTTCGAAAAAATTTGTTTTACCTTC 2907159 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTT 18751 || || ||| |||||||||||||| ||||||| Sbjct 2907160 CAAAGAGATATGCTCCATAAAATCAAACGGATTTT 2907194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562088662452240