Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq25 98.7 1e-15 >seq25 Length=3544016 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 ||||||||||| || | |||||| ||| || | ||| ||||| | ||||||||||| Sbjct 2907695 CTTCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCCGGCATAAGACCTCTTTTTT 2907754 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| || || || |||||| || || || |||||||| ||||| ||||||| Sbjct 2907755 TCAACCAGAAAATAGCAGCAAAACTGCCGCTGAAAAATATACCTTCCACTGCAGCAAATG 2907814 Query 37318 CTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTG 37377 | || | |||| | ||| || | ||| | || ||||| ||| || ||| | | Sbjct 2907815 CAACTACACGTTCAGGGAACGTGGCACTTTCATGGTTTATCCAATTTAATGCCCACTGAG 2907874 Query 37378 CCTTTAATTTAACACAT--TCAATTGTTTCAATTGCTTTTAAGAGAAAGT 37425 | ||| | |||||||| | ||| | |||||||| || || || |||| Sbjct 2907875 CTTTTTTTGTAACACATGGTAAAT--TCTCAATTGCATTAAATAGGAAGT 2907922 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||| ||| ||||||||||| || | |||||||||||||||| || ||||| Sbjct 2907100 CATTACTCCCCATTTCTGATATTCTCCCACCTTTTTTTCGAAAAAATTTGTTTTACCTTC 2907159 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | || |||| |||||||||||||| ||||| Sbjct 2907160 CAAAGAGATATGCTCCATAAAATCAAACGGATT 2907192 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 36992 TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTT 37051 |||||| | || | ||| || ||||||||||| || |||| |||||| |||| | | || Sbjct 2907295 TAATTCAATAAGTAACCTGTCAGCAACAAATTCGATATATTGACACATAAGTTTACAATT 2907354 Query 37052 TATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGC 37111 || || || | || || || | ||||| | |||| || ||| ||| | ||||| Sbjct 2907355 CATTCCTATCATTTCAACAGGTAAGGCATCCGTTAAAAATTCTTGTTCAATTTTGACAGC 2907414 Query 37112 ATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAA---TATTTAAA 37168 |||||||| || ||| | | ||| ||| | | || | || || | | ||| || Sbjct 2907415 ATCTTTAA-TA-ATTGA-TGTGACTCGTTCGGAAGATGGTTTTTGTATAATGTGTTTGAA 2907471 Query 37169 CAATAAACATGCAAAATCACAATGTA 37194 || ||||||||| ||||||||||||| Sbjct 2907472 CATTAAACATGCGAAATCACAATGTA 2907497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592295580250640