Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq65 120 2e-22 seq190 109 4e-19 >seq65 Length=2871674 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||||||||| ||||| || || | || | || ||||| ||||| |||||||| Sbjct 611824 TCCTTTTGAATATTATAATCGGAAAGTGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAG 611883 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || || ||||| | |||| ||||||||||| ||| ||| ||| ||| Sbjct 611884 ATCAATCTTTGCTGATCTGGTGGAATTCCCTCCTTGTCCTGAATTTTTGCTTTGACATTT 611943 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || ||||| || ||||||| ||||| || ||||| || | |||||||||| Sbjct 611944 TCAATGGTATCAGACGCTTCAACCTCCAAGGTAATAGTCTTTCCAGTAAGAGTTTTTACA 612003 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 612004 AAAATTTGCAT 612014 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||||||||| || |||||||| || | || |||| ||||| || || || || || Sbjct 610684 TCTTTTTGAATGTTATAATCAGAAAGTGTGCGTCCGTCTTCCAATTGTTTGCCAGCGAAA 610743 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || ||| || || | ||||| || |||||||| ||| || ||| ||| Sbjct 610744 ATCAATCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTT 610803 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||| || || | ||||| ||||| ||||| | ||| || || Sbjct 610804 TCAATTGTGTCAGAGGCCTCAACTTCAAGGGTAATAGTTTTACCCGTGAGAGTCTTAACG 610863 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 610864 AAAATTTGCAT 610874 >seq190 Length=691288 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || ||||| ||||| || || || ||||| |||||||||||||| || Sbjct 255066 GCCGCCACGAAGTCGCAATACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAATCTGA 255007 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| ||| | || || || || ||||| ||||| |||| ||||| || || | || Sbjct 255006 GAGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGCTGCTGGTCTGGAGG 254947 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||| ||||| |||||| ||| ||| | | | || || || || || Sbjct 254946 AATTCCCTCTTTGTCTTGGATCTTTGCTTTCACATTTTCTATTGTGTCAGAAGCTTCAAC 254887 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| |||||||| || || || || ||||| |||||||| Sbjct 254886 TTCAAGAGTAATAGTTTTTCCTGTTAAGGTCTTAACAAAGATCTGCAT 254839 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| || || || ||||| ||||||||||| || ||| ||| Sbjct 260515 AGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCCGAAAGAGTTCTT 260456 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || || ||||| || ||||| |||| || ||||| || | |||| || || Sbjct 260455 CCATCTTCTAATTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCT 260396 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || || || ||| ||| | | | ||||| || || ||||| | ||| Sbjct 260395 TTATCTTGGATTTTAGCTTTCACATTCTCTATTGTATCTGAGGCTTCTACCTCAAGAGTA 260336 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || | ||||| |||||||| ||||| Sbjct 260335 ATAGTTTTTCCTGTGAGTGTTTTGACAAAAATTTGCAT 260298 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||||||||| || || ||| || ||||| ||||| || || ||| ||| | || Sbjct 260282 CAACACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTTCTCCCATC 260223 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || || || ||||| || || || | || || || || | |||| || || ||||| Sbjct 260222 CTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGGAATTCCTTCTTTGTC 260163 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||| || || ||| | | | ||||| ||||| ||||| | ||||| || Sbjct 260162 TTGAATTTTCGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTACCTCGAGAGTAATAGT 260103 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || | ||||| ||||| |||||||| Sbjct 260102 TTTTCCTGTGAGTGTTTTGACAAAGATCTGCAT 260070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380924294087718