Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq190 113 4e-20 seq65 111 1e-19 seq139 84.2 2e-11 >seq190 Length=691288 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||||| || || |||||||| || ||| ||| ||||| Sbjct 255979 ATGCAAATCTTTGTCAAAACATTGACAGGAAAAACCATCACGTTAGAAGTAGAAGCTTCA 256038 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || |||| || |||||||| ||| | || ||| || Sbjct 256039 GACACAATAGAGAATGTGAAAGCTAAAATTCAA-GACAAAGAAGGAATTCCTCCAGACCA 256097 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | ||||| || || ||||| || || ||| | |||| || | |||||||| Sbjct 256098 GCAGCGTTTGATCTTCGCTGGTAAACAGTTAGAGGATGGAAGAACTCTGTCAGATTATAA 256157 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| || |||||||| || || || | ||||| ||| | |||||||| || Sbjct 256158 CATACAGAAAGAATCAACACTTCATCTTGTATTGAGACTCCGAGGAGGCAT 256208 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || ||||| || ||||| ||||| ||| ||| |||| Sbjct 254839 ATGCAGATCTTTGTTAAGACCTTAACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 254898 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || ||| ||| |||||||||||| | || ||| || Sbjct 254899 GACACAATAGAAAATGTGAAAGCAAAGATCCAAGACAAAGAGGGAATTCCTCCAGACCAG 254958 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | || ||||| || |||||||| |||||| | |||| | | ||||| || Sbjct 254959 CAGCGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTCTCAGATTACAAT 255018 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| |||||||||||||| ||| ||||||| || | || || || || Sbjct 255019 ATTCAGAAAGAATCTACTCTTCACTTGGTATTGCGACTTCGTGGCGGCAT 255068 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| |||||| | || || ||||| ||||| || || ||||| Sbjct 255067 ATGCAGATCTTTGTCAAAACACTCACAGGAAAAACTATTACTCTTGAGGTAGAGGCTTCA 255126 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| |||||||| ||| | ||| |||||| Sbjct 255127 GACACAATAGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGAATTCCCCCTGATCAA 255186 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || ||||| ||||||||||| |||||| | |||| | | |||||||| Sbjct 255187 CAACGTCTGATTTTTGCTGGCAAACAATTAGAAGATGGGAGAACTCTTTCGGATTATAAT 255246 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| |||||||| || || ||||||| || | || || || || Sbjct 255247 ATCCAAAAGGAATCTACACTCCATTTGGTATTGCGACTTCGTGGCGGTAT 255296 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| |||||| | || || ||||| ||||| || || ||||| Sbjct 255295 ATGCAGATCTTTGTCAAAACACTCACAGGAAAAACTATTACTCTTGAGGTAGAGGCTTCA 255354 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| |||||||| ||| | ||| |||||| Sbjct 255355 GACACAATAGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGAATTCCCCCTGATCAA 255414 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || ||||| ||||||||||| |||||| | |||| | | |||||||| Sbjct 255415 CAACGTCTGATTTTTGCTGGCAAACAATTAGAAGATGGGAGAACTCTTTCGGATTATAAT 255474 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| |||||||| || || ||||||| || | || || || || Sbjct 255475 ATCCAAAAGGAATCTACACTCCATTTGGTATTGCGACTTCGTGGCGGCAT 255524 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| |||||||| || || |||||||| ||| ||| ||| |||| Sbjct 255523 ATGCAGATCTTTGTCAAAACATTGACAGGAAAAACCATCACCTTGGAAGTAGAAGCTTCT 255582 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 | || | | | | || ||| ||| |||||||||||| | || ||| || Sbjct 255583 GGCACAATAGAGAACGTGAAAACAAAGATCCAAGACAAAGAGGGAATTCCTCCAGACCAG 255642 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | |||||||| || ||||| || |||||| | |||| || | || |||||| Sbjct 255643 CAGCGTTTGATCTTTGCTGGTAAACAGTTAGAAGATGGGAGAACTCTGTCAGACTATAAC 255702 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| |||||||| || || || | ||||| || | |||||||| || Sbjct 255703 ATTCAGAAAGAATCAACACTCCATCTTGTATTGCGACTCCGAGGAGGTAT 255752 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || |||||| | || || |||||||||||| ||| ||| |||| Sbjct 260526 ATGCAAATCTTCGTCAAAACACTCACAGGGAAAACCATTACCTTGGAAGTAGAAGCTTCT 260585 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||||| ||||| || ||| | || || || Sbjct 260586 GATACAATCGAAAATGTTAAGGCGAAAATTCAAGACAAGGAAGGAATTCCTCCTGACCAG 260645 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | |||||||| || || ||||| |||||| | |||| || ||||||||| Sbjct 260646 CAACGTTTGATCTTTGCTGGGAAGCAATTAGAAGATGGGAGAACTTTGTTGGATTATAAC 260705 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||||||| |||||||||||||| | || || ||| | || ||||| Sbjct 260706 ATTCAAAAGGAATCTACTCTGCATTTAGTGTTGAGACTCCGTGGAGG 260752 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| | || ||||| ||||| ||| ||| ||| |||| Sbjct 255751 ATGCAGATTTTTGTTAAAACGCTCACAGGTAAGACCATCACCTTGGAAGTAGAAGCTTCT 255810 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || |||| || |||||||| ||| | || || || Sbjct 255811 GACACAATAGAAAATGTGAAAGCTAAAATTCAA-GACAAAGAAGGAATTCCTCCTGACCA 255869 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | | ||||| || || |||||||| || ||| | |||| || | |||||||| Sbjct 255870 GCAACGTTTAATCTTCGCTGGTAAACAATTAGAGGATGGGAGAACTCTGTCAGATTATAA 255929 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||| |||||||| || || || | || || ||| | |||||||| || Sbjct 255930 CATTCAGAAAGAATCAACACTCCATCTTGTTTTGAGACTTCGAGGAGGCAT 255980 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||| | || || |||||||| || ||| ||| |||| Sbjct 256207 ATGCAAATCTTTGTCAAGACACTCACAGGAAAAACCATCACTTTGGAAGTAGAAGCTTCT 256266 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | || || |||| || |||||||| ||| | || ||||| Sbjct 256267 GACACAATAGAAAACGTGAAAGCTAAAATTCAA-GACAAAGAAGGAATTCCTCCTGATCA 256325 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | | |||||||| || || || || |||||| | |||| || ||||| || Sbjct 256326 GCAACGTTTGATCTTTGCTGGGAAGCAGTTAGAAGATGGAAGAACTTTGTTGGATTACAA 256385 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||||||| |||||||| || || | || |||||| | ||||| || Sbjct 256386 CATTCAAAAGGAATCTACACTCCATTTAGTTTTAAGACTCCGAGGTGG 256433 >seq65 Length=2871674 Score = 111 bits (122), Expect = 1e-19 Identities = 151/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| | || || || || |||||| || ||| | || Sbjct 612014 ATGCAAATTTTTGTAAAAACTCTTACTGGAAAGACTATTACCTTGGAGGTTGAAGCGTCT 611955 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || |||| ||||||| || ||||| |||||| | || |||||| Sbjct 611954 GATACCATTGAAAATGTCAAAGCAAAAATTCAG-GACAAGGAGGGAATTCCACCAGATCA 611896 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 28730 || ||| | |||||||| ||||| |||||||||||| | | ||| | |||||||| Sbjct 611895 GCAAAGATTGATCTTTGCCGGCAAGCAATTGGAAGATGGACGCACACTTT--CCGATTAT 611838 Query 28731 AACATTCAAAAAGAATCTACTCTGCA 28756 || |||||||| ||||| |||||||| Sbjct 611837 AATATTCAAAAGGAATCAACTCTGCA 611812 Score = 104 bits (114), Expect = 2e-17 Identities = 154/214 (72%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || || || | ||||||||||| |||||| ||| || | || Sbjct 610875 AATGCAAATTTTCGTTAAGACTCTCACGGGTAAAACTATTACCCTTGAAGTTGAGGCCTC 610816 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || |||| || |||| || ||||| || ||| | ||| ||| | Sbjct 610815 TGACACAATTGAAAATGTCAAAGCCAAAATTCAG-GACAAGGAAGGAATTCCCCCAGACC 610757 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTA 28729 | |||||| | || || || ||||||||||||||||| | | ||| | | ||||| Sbjct 610756 AGCAGAGATTGATTTTCGCTGGCAAACAATTGGAAGACGGACGCACACTTT--CTGATTA 610699 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTA 28763 |||||||||||||||||| ||||| ||| | ||| Sbjct 610698 TAACATTCAAAAAGAATCGACTCTTCACCTTGTA 610665 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || | || ||||||||||||||| ||| || |||| Sbjct 611786 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAAGTTGAGGCTTCT 611727 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || || || ||||| || | || |||||| Sbjct 611726 GACACAATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAG 611667 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTATA 28731 |||||| | ||||| || ||||||||||||||||| | | ||| | ||||||||| Sbjct 611666 CAGAGATTGATCTTCGCCGGCAAACAATTGGAAGACGGACGCACACTTT--CCGATTATA 611609 Query 28732 ACATTCAAAAAGAATCTACTCTGCA 28756 |||| ||||| ||||| |||||||| Sbjct 611608 ACATCCAAAAGGAATCAACTCTGCA 611584 >seq139 Length=3030711 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| |||||||| || || || || ||||||||||| ||| ||| ||| | || Sbjct 1044556 AATGCAGATATTTGTGAAGACTTTGACAGGTAAAACCATCACCCTTGAAGTAGAAGCATC 1044615 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || | ||| ||||| || ||||| ||| | || ||||| Sbjct 1044616 AGACACTATTGAAAATGTGAAGGCTAAAATTCAGGATAAAGAAGGAATTCCACCTGATCA 1044675 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||||||| ||||| || ||||| ||||||||| || || | |||||||| Sbjct 1044676 ACAACGACTTATATTTGCTGGAAAACAGTTGGAAGATGGACGTACCTTGTCAGATTATAA 1044735 Query 28733 CATTCAAAAAG 28743 || || |||| Sbjct 1044736 TATCCAGAAAG 1044746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425389940876214