Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq64 129 3e-25 >seq64 Length=2955609 Score = 129 bits (142), Expect = 3e-25 Identities = 213/305 (70%), Gaps = 8/305 (3%) Strand=Plus/Minus Query 25999 ATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGC 26058 ||| ||||| |||||||| || ||||| ||||||| ||||||||||| ||||| ||||| Sbjct 1696655 ATTTTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCCAAATATATAGC 1696596 Query 26059 AAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAAC 26118 ||| ||| |||||| ||| |||||||| || || | || || | |||| | || Sbjct 1696595 AAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATACCGAGCTGTGTTATTGTATAC 1696536 Query 26119 TTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGT----GCTATGAATCTTGGATC 26174 | | | |||||||| ||| ||| | || | || ||| ||||| | || | | Sbjct 1696535 TCTGATCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTAT---TGGTGTA-C 1696480 Query 26175 CTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTG 26234 || | | || |||| || ||| || || || |||||||| |||| |||| || Sbjct 1696479 CTTTTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCTGATTTACTAATAAGTG 1696420 Query 26235 CACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAA 26294 |||| | | |||||| ||||||||| ||||||||| | ||||| || ||||| Sbjct 1696419 CACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCATCACTCATTGTTAGTAAAA 1696360 Query 26295 AACAA 26299 | ||| Sbjct 1696359 AGCAA 1696355 Score = 111 bits (122), Expect = 8e-20 Identities = 119/154 (77%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 25016 AATTCTCCAGACAAAACTCTTCTTATTGATAAGT-TTGAAGTGA-ATGGTTCAAAACATT 25073 ||||||||||||| |||||||||| |||| | ||| | | ||||||| | ||| Sbjct 1697923 AATTCTCCAGACAGAACTCTTCTTGC--ATAAATATTGCTGGTATATGGTTCTATGGATT 1697866 Query 25074 CATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAAT 25133 ||||||||||||| ||||| | |||||||||||||||||| ||| |||| || |||| Sbjct 1697865 CATTATTTCCTAAAATTTGTGCAGTAGATGCTGTTGGCATAGGTGCAATTAGTAAAGAAT 1697806 Query 25134 TTCTCAAACCATATTTAACAATCTCTTGTTTTAA 25167 |||| | |||| |||| |||| | || ||| || Sbjct 1697805 TTCTAATTCCATGTTTAGCAATTTTTTCTTTCAA 1697772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253031161470950