Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq193 107 6e-18 seq212 95.1 4e-14 seq44 95.1 4e-14 seq2471 86.0 2e-11 seq61 86.0 2e-11 seq64 84.2 6e-11 >seq193 Length=3296626 Score = 107 bits (118), Expect = 6e-18 Identities = 185/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || ||||||||||| || || |||||| | ||||||||||| ||| Sbjct 2754441 TCCATAGCCTTTATCAAACGACGCTGGATGTACCCAGTTTCTGCAGTTTTTACAGCAGTA 2754500 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| ||||||| ||||| || || || | | ||| ||| || || Sbjct 2754501 TCGATAAGACCCTCACGACCTCCCATGGCGTGAAAATAAAACTCGGATGGTGTTAAACCA 2754560 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAG 302754 ||| | ||| | |||||||| || | | || || || || |||| | || Sbjct 2754561 GCAAGGTACGAGTTTTCAACGAATCCTCTGGATTCAGGACCATAATCATCCTTGATGAAA 2754620 Query 302755 TGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGT 302814 ||||||| || || || | | ||| | || ||||| || || || ||||||||||| Sbjct 2754621 TGTGGCAACGTTCTTTTGCGAAAACCGAACGGAATACGTTTACCTTCTACGTTCTGCTGA 2754680 Query 302815 CCCAGGCACGAAATCATCTGCGAAATATT 302843 || | ||| | ||| | ||| || ||||| Sbjct 2754681 CCGACGCAAGCAATAACCTGAGAGATATT 2754709 Score = 100 bits (110), Expect = 8e-16 Identities = 111/145 (77%), Gaps = 5/145 (3%) Strand=Plus/Plus Query 301815 AATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAA 301873 |||||| |||||| | || |||||| | |||||||| ||| |||| |||||||||| Sbjct 2753498 AATTTCCTTCAAT-CTCGGTACACCAAGAGTTACGTT---CTTTGACGATACACCAGCAA 2753553 Query 301874 AGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCA 301933 | |||||||||||||| || | |||||| | || ||||||| |||||| || | Sbjct 2753554 AATGGAAAGTATTCAGTGTCATTTGAGTTGCAGGTTCACCAAGCGATTGTGCAGCCAAAG 2753613 Query 301934 TACCAACCATTTCTCCTGGTGCTAC 301958 ||| ||||||||||| |||| ||| Sbjct 2753614 CACCTACCATTTCTCCCGGTGATAC 2753638 >seq212 Length=285445 Score = 95.1 bits (104), Expect = 4e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 ||||||||||| ||||||||||| ||||| || || ||||| ||| | || || ||| Sbjct 35104 ATAGTCATACGCGATGGAATAGCATGCGGATTAATTATAATGTCTGGTGTAAGACCTTCA 35045 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCCGTG 251963 | ||| ||||||| ||| | || || ||| ||||| ||| ||||||||||| || Sbjct 35044 CATGAGAATGGCATAT-CTTCTTGTCTGTATTGTATTCCACAAGTACCCTTTTGTCCATG 34986 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023 ||| ||| || || || || || ||| |||||||| || | || | ||||| Sbjct 34985 ACGTGAAGCAAATTTGTCTCCTATTTGTGGAATACGAACACTGCGCACTCGTATTTTACA 34926 Query 252024 GAAGTTGTAACCATCACCGTT 252044 || || || || |||| ||| Sbjct 34925 AAATTTATATCCTTCACTGTT 34905 Score = 95.1 bits (104), Expect = 4e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 ||||||||||| ||||||||||| ||||| || || ||||| ||| | || || ||| Sbjct 41538 ATAGTCATACGCGATGGAATAGCATGCGGATTAATTATAATGTCTGGTGTAAGACCTTCA 41479 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCCGTG 251963 | ||| ||||||| ||| | || || ||| ||||| ||| ||||||||||| || Sbjct 41478 CATGAGAATGGCATAT-CTTCTTGTCTGTATTGTATTCCACAAGTACCCTTTTGTCCATG 41420 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023 ||| ||| || || || || || ||| |||||||| || | || | ||||| Sbjct 41419 ACGTGAAGCAAATTTGTCTCCTATTTGTGGAATACGAACACTGCGCACTCGTATTTTACA 41360 Query 252024 GAAGTTGTAACCATCACCGTT 252044 || || || || |||| ||| Sbjct 41359 AAATTTATATCCTTCACTGTT 41339 >seq44 Length=3076595 Score = 95.1 bits (104), Expect = 4e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 289018 CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGT 289077 ||| |||| || ||||| ||||| |||||||||||||| | | ||| || | | || Sbjct 868512 CTCGTTTTCTT-CCAACGGCATCGATTTCGTCAATGAATAATATACATGGTGCGTGTTTC 868454 Query 289078 CTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACA 289137 | || | || || | |||| || | |||| |||| ||||||| ||||||| | | Sbjct 868453 CGTGCCAACGCGAACATATCTCGAACTCTTGATGGACCAACACCAACAAACATTTCCAAA 868394 Query 289138 AATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCC 289197 ||||||||| | ||||| ||| || | |||||||||||| || || || | || Sbjct 868393 AATTCAGAACCTGATACACTAATAAAAGGTACATTTGCTTCACCAGCAGTAGCTTTAGCT 868334 Query 289198 AGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226 | | ||| ||||| || || ||||| || Sbjct 868333 AATAATGTTTTACCAGTACCCGGTGGACC 868305 >seq2471 Length=924 Score = 86.0 bits (94), Expect = 2e-11 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 ||||||||||| ||||||||||| ||||| || || ||||| ||| | || || ||| Sbjct 737 ATAGTCATACGCGATGGAATAGCATGCGGATTAATTATAATGTCTGGTGTAAGACCTTCA 796 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCCGTG 251963 | ||| ||||||| ||| | || || ||| ||||| ||| ||||||||||| || Sbjct 797 CATGAGAATGGCATAT-CTTCTTGTCTGTATTGTATTCCACAAGTACCCTTTTGTCCATG 855 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023 ||| ||| || || || || || ||| |||||||| || | || | ||||| Sbjct 856 ACGTGAAGCAAATTTGTCTCCTATTTGTGGAATACGAACACTGCGCACTCGTATTTTACA 915 Query 252024 GAAGTTGTA 252032 || || || Sbjct 916 AAATTTATA 924 >seq61 Length=1494429 Score = 86.0 bits (94), Expect = 2e-11 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 106924 CATACCATAGAAAAACTTGAACTTTTTACCATCTTCCTCAATTAACTTACCTGGATTTTC 106983 |||||||||||| | || | |||||||||| | || ||| | |||| | ||| Sbjct 374082 CATACCATAGAACAGTTTATATTTTTTACCATTTCTGTCTATTGTATCACCTCCACATTC 374141 Query 106984 ATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATCAGCCCCGCCACCGAATGCTTT 107043 || ||||| ||||| | ||| || ||||||| ||||| || || |||| || ||||| Sbjct 374142 GTCATGTCCAGCAAACATACCTCCTGCCATTACAAAATCTGCTCCAGCACCAAAAGCTTT 374201 Query 107044 AGCCATATCACCAGGGCAAGTAATTCCACCATCACTAATAATATAA 107089 || | |||||| || ||||| |||||||| |||| |||| || Sbjct 374202 TGCTAAATCACCTGGACAAGTGCAACCACCATC-CTAA-AATAAAA 374245 >seq64 Length=2955609 Score = 84.2 bits (92), Expect = 6e-11 Identities = 194/290 (67%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 155994 AGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA-CTACC 156052 || ||||| ||||| ||||| | ||| ||| |||| ||| |||||||| || | Sbjct 1696645 AGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCCAAATATATAGCAAATGCTCCT 1696586 Query 156053 ATTCCTCT--TGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATA 156110 || | | | || || ||||| ||||||||||| || |||||| | || | | ||| Sbjct 1696585 GGTCTTTTATTTCCTCCTTGATCAACATACCGAGCTGTGTTATTGTATACTCTGATCATT 1696526 Query 156111 GGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACA 156170 ||||| | |||||| || ||| || || || | | ||| || |||| | Sbjct 1696525 GGAATTAAACCATTAGATACACCAAGTGTACCAGCTATTGGTGTACCTTTTGCTCGAATA 1696466 Query 156171 TTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACA 156230 ||| | || |||||||||||||| | ||||| ||| | || ||| |||| Sbjct 1696465 CAATGTACATTAAGTCCAATACCACCAGCTGATTTACTAATAAGTGCACATCTTTTTAAT 1696406 Query 156231 GTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA 156280 |||| |||| |||||||| |||||| ||||| ||||| | |||| Sbjct 1696405 GTATCATAAATTCCTTCAATGCTATCATCACTCATTGTTAGTAAAAAGCA 1696356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471763553937842