Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq174 235 5e-57 seq190 93.3 3e-14 >seq174 Length=4765277 Score = 235 bits (260), Expect = 5e-57 Identities = 288/393 (73%), Gaps = 0/393 (0%) Strand=Plus/Plus Query 34255 CCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATG 34314 || || |||||||| |||||||| || || |||| | ||| || | | || || Sbjct 4244926 CCATGGTAACCGCACGCTTTGCATCCTTGCGAGATGGTTCCCTTCTTCGAGTTAACCATC 4244985 Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 ||||| ||||| || ||||| || ||||||||| ||| | || || ||||| ||||| Sbjct 4244986 AGCTCGGTCTCGGGATTGTCGCAAGCCGGACACAGTACATATTTACGAATGAATCCATCC 4245045 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 | || ||||| | || | ||||| || ||||| |||||||| | || |||||| Sbjct 4245046 AAAAGATCCTGCAGTTTCGTTGCATCGTGCGAACCGTTCACGATGAACCTCTCATTTTTG 4245105 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCC 34494 |||||| || ||||| || || |||||||| || ||||| || || || || |||| Sbjct 4245106 AAATCGAATTGGGTTTGAGCACCGAGCTCGCAACCAAAGTATTTGGTAGGATAGGTGGCA 4245165 Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 || | |||| ||| || |||| || |||||| ||||| || || || |||||||| Sbjct 4245166 GGTCTCCCAATCGCTTTAGCGACATCAACCATGTTCACGATTACGGTTTTAATGCCGTTC 4245225 Query 34555 CCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614 ||||| || || || ||||| |||||||||||||||||||||||||||||| || Sbjct 4245226 CCCTTACCCTCTACTTTGGCTTGGATGCGCGGCATTTTGTAGCGGTAGAACGCATCGCTG 4245285 Query 34615 ACATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647 || || || || ||||| ||| ||||||| ||| Sbjct 4245286 ACGTTACGATTTACGTTGACACTCCCCATGGTG 4245318 >seq190 Length=691288 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| | || || |||||||||||| | ||| || || Sbjct 260526 ATGCAAATCTTCGTCAAAACACTCACAGGGAAAACCATTACCTTGGAAGTAGAAGCTTCT 260585 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || || ||| ||| ||||| ||||| | || || || Sbjct 260586 GATACAATCGAAAATGTTAAGGCGAAAATTCAAGACAAGGAAGGAATTCCTCCTGACCAG 260645 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | ||| || || || | || |||| ||||| || |||||| ||| Sbjct 260646 CAACGTTTGATCTTTGCTGGGAAGCAATTAGAAGATGGGAGAACTTTGTTGGATTATAAC 260705 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||| |||||||| |||| | ||||| ||||| || || |||| Sbjct 260706 ATTCAAAAGGAATCTACTCTGCATTTAGTGTTGAGACTCCGTGGAGGAA 260754 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || | || || |||||||| || | ||| || || Sbjct 256207 ATGCAAATCTTTGTCAAGACACTCACAGGAAAAACCATCACTTTGGAAGTAGAAGCTTCT 256266 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| || ||| ||||||||||| | || ||||| Sbjct 256267 GACACAATAGAAAACGTGAAAGCTAAAATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 256326 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | ||| || || ||| | || |||| ||||| || |||||||||| Sbjct 256327 CAACGTTTGATCTTTGCTGGGAAGCAGTTAGAAGATGGAAGAACTTTGTTGGATTACAAC 256386 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| |||||||| | || | || |||||||| ||||| || Sbjct 256387 ATTCAAAAGGAATCTACACTCCATTTAGTTTTAAGACTCCGAGGTGG 256433 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||||||||| | || || ||||| ||||| |||| ||| || Sbjct 260070 ATGCAGATCTTTGTCAAAACACTCACAGGAAAAACTATTACTCTCGAGGTAGAGGCTTCA 260129 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||| ||| ||||||||||| | || || || Sbjct 260130 GACACAATAGAGAATGTTAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCTGACCAG 260189 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | || |||||||| | ||||||| ||||| | |||| |||||| Sbjct 260190 CAACGTTTAATCTTCGCTGGTAAACAATTAGAGGATGGGAGAACTCTTTCGGACTACAAC 260249 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || ||||| | || ||||||| ||||| ||||| || Sbjct 260250 ATTCAGAAGGAGTCTACTCTCCATTTGGTGTTGAGACTTCGAGGAGG 260296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412827179700938