Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq190 89.7 4e-13 seq65 86.0 5e-12 >seq190 Length=691288 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||||||||| | ||||| ||||| ||||| |||| |||||| Sbjct 260070 ATGCAGATCTTTGTCAAAACACTCACAGGAAAAACTATTACTCTCGAGGTAGAGGCTTCA 260129 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || || ||| || |||||||| | || || ||| Sbjct 260130 GACACAATAGAGAATGTTAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCTGACCAG 260189 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | | || | || |||||||| | ||||| | | ||| | ||||||||||| Sbjct 260190 CAACGTTTAATCTTCGCTGGTAAACAATTAGAGGATGGGAGAACTCTTTCGGACTACAAC 260249 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| ||||||||||| | || ||||||||||| | ||||| || Sbjct 260250 ATTCAGAAGGAGTCTACTCTCCATTTGGTGTTGAGACTTCGAGGAGG 260296 >seq65 Length=2871674 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/201 (70%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||| || | ||||| |||||||||||| | ||| |||||| Sbjct 611330 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAAGTTGAGGCTTCT 611271 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || |||||| ||||||||||| | || |||||| Sbjct 611270 GACACAATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAG 611211 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731 || ||| | |||| ||| || ||||| || || |||||| ||| | |||| || Sbjct 611210 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGACGC----ACACTTTCGGATTA 611155 Query 107732 CAACATTCAAAAGGAGTCTAC 107752 ||||| |||||||| || || Sbjct 611154 TAACATCCAAAAGGAATCAAC 611134 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/201 (70%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||| || | ||||| |||||||||||| | ||| |||||| Sbjct 611558 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAAGTTGAGGCTTCT 611499 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || |||||| ||||||||||| | || |||||| Sbjct 611498 GACACAATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAG 611439 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731 || ||| | |||| ||| || ||||| || || |||||| ||| | |||| || Sbjct 611438 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGACGC----ACACTTTCGGATTA 611383 Query 107732 CAACATTCAAAAGGAGTCTAC 107752 ||||| |||||||| || || Sbjct 611382 TAACATCCAAAAGGAATCAAC 611362 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||| || | ||||| |||||||||||| | ||| |||||| Sbjct 611786 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAAGTTGAGGCTTCT 611727 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || |||||| ||||||||||| | || |||||| Sbjct 611726 GACACAATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAG 611667 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | || || ||||| |||| |||| ||| | | || || ||| Sbjct 611666 CAGAGATTGATCTTCGCCGGCAAACAATTGGAAGACGGACGCACACTTTCCGATTATAAC 611607 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 || |||||||| || || |||| Sbjct 611606 ATCCAAAAGGAATCAACTCTGCA 611584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398862867482674