Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq155 91.5 2e-13 seq2471 87.8 2e-12 seq212 87.8 2e-12 >seq155 Length=3151304 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 163001 AAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAACAA 163060 || ||||| |||||| ||| | ||| || ||||| | | ||| | || |||||| Sbjct 3004193 AAAGTTGCACAATTAGCTGGTTCTGTAGCTGAACATTCTGCATATCACCATGGTGAAGTC 3004252 Query 163061 AAT-TTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 163119 | |||||| || | || ||||| |||| ||| |||| ||||| | ||||||||| Sbjct 3004253 TCTCTTATGTCAA-CAATCATTAATCTTGCACAAAATTTCGTTGGAAGTAATAATATAAA 3004311 Query 163120 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGAT 163171 |||||| |||| ||||||||||||||| ||| | | |||||| || ||| Sbjct 3004312 TTTACTTCAACCGATTGGTCAATTTGGTACAAGACTTGCAGGAGGAAAGGAT 3004363 >seq2471 Length=924 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGG 193498 ||||| || ||||||| || |||||| |||| | |||| | |||| || |||||||| Sbjct 891 CGTATTCCACAAATAGGAGACAAATTTGCTTCACGTCATGGAC-AAAAGGGTACTTGTGG 833 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 || || |||||||||||||||||| || | |||| | |||||| ||||| Sbjct 832 AATACAATACAGACAAGAAGATATGCCATTCTCATGTGAAGGTCTTACACCAGACATTAT 773 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 |||||||| || ||||||||| | ||||| ||| ||| | |||| Sbjct 772 AATTAATCCGCATGCTATTCCATCGCGTATGACTATTGGTCACTTGATTG 723 >seq212 Length=285445 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGG 193498 ||||| || ||||||| || |||||| |||| | |||| | |||| || |||||||| Sbjct 34950 CGTATTCCACAAATAGGAGACAAATTTGCTTCACGTCATGGAC-AAAAGGGTACTTGTGG 35008 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 || || |||||||||||||||||| || | |||| | |||||| ||||| Sbjct 35009 AATACAATACAGACAAGAAGATATGCCATTCTCATGTGAAGGTCTTACACCAGACATTAT 35068 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 |||||||| || ||||||||| | ||||| ||| ||| | |||| Sbjct 35069 AATTAATCCGCATGCTATTCCATCGCGTATGACTATTGGTCACTTGATTG 35118 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGG 193498 ||||| || ||||||| || |||||| |||| | |||| | |||| || |||||||| Sbjct 41384 CGTATTCCACAAATAGGAGACAAATTTGCTTCACGTCATGGAC-AAAAGGGTACTTGTGG 41442 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 || || |||||||||||||||||| || | |||| | |||||| ||||| Sbjct 41443 AATACAATACAGACAAGAAGATATGCCATTCTCATGTGAAGGTCTTACACCAGACATTAT 41502 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 |||||||| || ||||||||| | ||||| ||| ||| | |||| Sbjct 41503 AATTAATCCGCATGCTATTCCATCGCGTATGACTATTGGTCACTTGATTG 41552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635154844762480