Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq190 134 1e-26 seq65 91.5 1e-13 seq139 82.4 7e-11 >seq190 Length=691288 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 137200 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 137259 ||||||||||| | ||||||||| ||||| ||||||||||| || || || ||| Sbjct 256418 AAAACTAAATGGAGTGTAGATTCCTTTTGAATGTTGTAATCCAACAAAGTTCTTCCATCT 256359 Query 137260 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 137319 || | || || |||||| |||||| |||||||||||| ||||| || ||||||||||| Sbjct 256358 TCTAACTGCTTCCCAGCAAAGATCAAACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCT 256299 Query 137320 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTC 137379 |||||| ||| | | ||| | ||||| | | ||||||||| | ||| | || Sbjct 256298 TGAATTTTAGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCTACTTCCAAAGTGATGGTT 256239 Query 137380 TTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || || | ||| || || || |||||||| Sbjct 256238 TTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 256207 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||||||||| | | ||| || | ||||| ||| |||||||| |||||||| ||||| Sbjct 256206 GCCTCCTCGGAGTCTCAATACAAGATGAAGTGTTGATTCTTTCTGTATGTTATAATCTGA 256147 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || || || || || | ||||||||||| |||||| ||| ||||| || ||||| Sbjct 256146 CAGAGTTCTTCCATCCTCTAACTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGAGG 256087 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| |||||| ||| | | || | ||||||| | |||||| Sbjct 256086 AATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTCTCTATTGTGTCTGAAGCTTCTAC 256027 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | || | || || || ||||||||||| || || |||||||| Sbjct 256026 TTCTAACGTGATGGTTTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 255979 Score = 125 bits (138), Expect = 7e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||||||||| | | |||||| | ||| | ||| |||||||| || ||||| ||||| Sbjct 255978 GCCTCCTCGAAGTCTCAAAACAAGATGGAGTGTTGATTCTTTCTGAATGTTATAATCTGA 255919 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || || ||| || || | |||||||||||| |||| | ||||||||| || ||||| Sbjct 255918 CAGAGTTCTCCCATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGG 255859 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| |||||| ||| | | ||| | ||||| | | |||||| Sbjct 255858 AATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCTATTGTGTCAGAAGCTTCTAC 255799 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 ||| | || | ||||| || || | ||||| || || || |||||| || Sbjct 255798 TTCCAAGGTGATGGTCTTACCTGTGAGCGTTTTAACAAAAATCTGCATACCT 255747 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||||| || ||||| | ||||||||| ||||| || || ||||| Sbjct 255522 GCCGCCACGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCCGA 255463 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || ||| ||||| | |||||| |||||| | ||||||||||| ||||| || || Sbjct 255462 AAGAGTTCTCCCATCTTCTAATTGTTTGCCAGCAAAAATCAGACGTTGTTGATCAGGGGG 255403 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| ||||||| || | | || | ||||||| | ||||| Sbjct 255402 AATTCCTTCTTTGTCTTGAATTTTTGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTAC 255343 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| ||| | || || || || | |||||| || || || |||||| Sbjct 255342 CTCAAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCATA 255294 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 ||||| || ||||| | ||||||||| ||||| || || ||||| | || ||| Sbjct 255281 CGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCCGAAAGAGTTCTCCCA 255222 Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| | |||||| |||||| | ||||||||||| ||||| || || || ||||||||| Sbjct 255221 TCTTCTAATTGTTTGCCAGCAAAAATCAGACGTTGTTGATCAGGGGGAATTCCTTCTTTG 255162 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || ||||||| || | | || | ||||||| | ||||| |||| ||| | Sbjct 255161 TCTTGAATTTTTGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTACCTCAAGAGTAATA 255102 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || || || | |||||| || || || ||||| Sbjct 255101 GTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCAT 255067 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 |||||||| | ||||| || | ||| | ||| |||||||| || ||||| || || | Sbjct 255749 CCTCCTCGGAGTCGCAATACAAGATGGAGTGTTGATTCTTTCTGAATGTTATAGTCTGAC 255690 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || ||| ||||| | |||||||||||| |||||| ||| ||||| || ||||| Sbjct 255689 AGAGTTCTCCCATCTTCTAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 255630 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || |||||||| || ||| ||| | | || | ||| | | | ||||||| Sbjct 255629 ATTCCCTCTTTGTCTTGGATCTTTGTTTTCACGTTCTCTATTGTGCCAGAAGCTTCTACT 255570 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || || ||||||||||| || || || ||||| Sbjct 255569 TCCAAGGTGATGGTTTTTCCTGTCAATGTTTTGACAAAGATCTGCAT 255523 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||||| || || |||| ||||||||||| || || |||||||| Sbjct 255066 GCCGCCACGAAGTCGCAATACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAATCTGA 255007 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || || ||||| | ||||||||||||| | |||| ||| ||||| || ||||| Sbjct 255006 GAGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGCTGCTGGTCTGGAGG 254947 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || |||||||| || ||| ||| | | ||| | ||||| | | ||| || Sbjct 254946 AATTCCCTCTTTGTCTTGGATCTTTGCTTTCACATTTTCTATTGTGTCAGAAGCTTCAAC 254887 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||| ||| | || || || || || || || || || || |||||| Sbjct 254886 TTCAAGAGTAATAGTTTTTCCTGTTAAGGTCTTAACAAAGATCTGCATA 254838 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||||| || ||||| | ||||||||| ||||| || || ||||| Sbjct 260069 GCCGCCACGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGA 260010 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || || || || || | ||||| |||||| |||||| ||||||||||| || || Sbjct 260009 CAAAGTTCTTCCATCCTCTAACTGTTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGTGG 259950 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||||||| || | | ||| | ||||| | | ||| || Sbjct 259949 AATTCCTTCCTTGTCCTGAATTTTTGCCTTAACATTTTCGATTGTGTCAGAAGCTTCAAC 259890 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| ||| | || || || || || || || || || || ||||| Sbjct 259889 TTCAAGAGTAATAGTTTTTCCTGTTAAGGTCTTAACAAAGATCTGCAT 259842 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||||||||| | | ||| || ||||| | ||||| || || || |||||||| || Sbjct 260297 GCCTCCTCGAAGTCTCAACACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGA 260238 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || ||| || || | |||||||||||| |||| | ||||||||| || ||||| Sbjct 260237 AAGAGTTCTCCCATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGG 260178 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| |||||| || | | || | ||||||| | ||||| Sbjct 260177 AATTCCTTCTTTGTCTTGAATTTTCGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTAC 260118 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | || || || || | |||||| || || || ||||| Sbjct 260117 CTCGAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCAT 260070 >seq65 Length=2871674 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 || || ||||| | ||| | || | |||| || ||||||||||| ||||| ||||| Sbjct 610645 TGACCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATGTTATAATCA 610704 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 | ||||| |||||| | |||||| ||||| | |||| | ||||| || || Sbjct 610705 GAAAGTGTGCGTCCGTCTTCCAATTGTTTGCCAGCGAAAATCAATCTCTGCTGGTCTGGG 610764 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || || ||||| ||||| |||||| ||| | | ||| | ||||| | || || Sbjct 610765 GGAATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTTTCAATTGTGTCAGAGGCCTCA 610824 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||||| || | || || || || | || || ||||| |||||||| Sbjct 610825 ACTTCAAGGGTAATAGTTTTACCCGTGAGAGTCTTAACGAAAATTTGCAT 610874 >seq139 Length=3030711 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| | ||||| |||||| | || || ||||| ||||| || || || |||||||| Sbjct 1044711 TCTTCCAACTGTTTTCCAGCAAATATAAGTCGTTGTTGATCAGGTGGAATTCCTTCTTTA 1044652 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || |||||| || | | ||| | ||||||| | ||||||||||| || | Sbjct 1044651 TCCTGAATTTTAGCCTTCACATTTTCAATAGTGTCTGATGCTTCTACTTCAAGGGTGATG 1044592 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || || ||||| || || || ||||| ||||| Sbjct 1044591 GTTTTACCTGTCAAAGTCTTCACAAATATCTGCAT 1044557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488526497911200