Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq41 93.3 8e-14 seq139 84.2 4e-11 >seq41 Length=2258467 Score = 93.3 bits (102), Expect = 8e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 183196 GTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATA 183255 |||||||| |||||||||||||| || | || ||| | ||| ||||||| |||| Sbjct 2055031 GTAGGTTGCATGTGGTCTATTTGTGGTGTCCATGATCATGGTTGGTCAGAAAGAGATATA 2055090 Query 183256 TTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGC 183311 ||||| || |||||||| |||||||||||| | | ||| |||||| ||||||| Sbjct 2055091 TTTGGGAAAATAAGATACATGAATTATGAGGGATGTAAACGAAAATTTAATGTTGC 2055146 >seq139 Length=3030711 Score = 84.2 bits (92), Expect = 4e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 82042 ACATGGTGTTTATATTTATGTAGAGCTTGTCTAGCTTTAGGTATTAATATAGTTTTATCC 82101 |||| ||||| || |||| ||| || | ||| ||||| | |||||| | | ||| ||| Sbjct 2105318 ACATTATGTTTGTACTTATTTAGTGCATTTCTTGCTTTTGATATTAAAAGATTTTCATCA 2105259 Query 82102 GTTTCTAATTTGAATGATACTACAAAAGCATTTGGACACCATTCATCTACTAAATGAAAT 82161 ||||||| ||| ||||||||||||||||| | |||| ||| | ||| | | || | Sbjct 2105258 GTTTCTAGTTTAAATGATACTACAAAAGCCTGTGGAACCCACAAACTTACAAGAGGAGCT 2105199 Query 82162 AACATTTTAGGGAC 82175 || ||||| || || Sbjct 2105198 AATATTTTTGGTAC 2105185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903378835293760