Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq507 98.7 1e-15 seq174 98.7 1e-15 seq144 98.7 1e-15 seq33 98.7 1e-15 seq4 91.5 2e-13 >seq507 Length=66916 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||||| Sbjct 53278 TCCTCGGTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 53337 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 53338 CCCGCCGGGGAG 53349 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 53276 AGTCCTCGGTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 53335 Query 11787 TCCCCGACGAGGAG 11800 |||||| || |||| Sbjct 53336 TCCCCGCCGGGGAG 53349 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 139350 CAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCA 139409 || |||| || |||||| |||||||||||||||||| | |||| |||||||| |||||| Sbjct 53352 CATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 53293 Query 139410 CTATACTAACGAGGATTT 139427 |||||||| |||||| || Sbjct 53292 CTATACTACCGAGGACTT 53275 >seq174 Length=4765277 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||||| Sbjct 628320 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 628261 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 628260 CCCGTCGGGGAG 628249 Score = 95.1 bits (104), Expect = 2e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 628322 AGTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 628263 Query 11787 TCCCCGACGAGGAGGGA 11803 |||||| || |||| || Sbjct 628262 TCCCCGTCGGGGAGAGA 628246 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 628249 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 628308 Query 139413 TACTAACGAGGATTT 139427 ||||| |||||| || Sbjct 628309 TACTATCGAGGACTT 628323 >seq144 Length=113180 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||||| Sbjct 40581 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 40522 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 40521 CCCGTCGGGGAG 40510 Score = 96.9 bits (106), Expect = 5e-15 Identities = 70/80 (88%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 11722 TAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGG 11780 ||| | |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||| Sbjct 40589 TAATCAAGTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGG 40530 Query 11781 TTCGATTCCCCGACGAGGAG 11800 |||||||||||| || |||| Sbjct 40529 TTCGATTCCCCGTCGGGGAG 40510 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 139350 CAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCA 139409 || |||| || |||||| |||||||||||||||||| | |||| |||||||| |||||| Sbjct 40507 CATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 40566 Query 139410 CTATACTAACGAGGATTT 139427 |||||||| |||||| || Sbjct 40567 CTATACTATCGAGGACTT 40584 >seq33 Length=501593 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||||| Sbjct 345633 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 345574 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 345573 CCCGTCGGGGAG 345562 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410 |||||| || |||||| |||||||||||||||||| | |||| |||||||| ||||||| Sbjct 345560 AACTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 345619 Query 139411 TATACTAACGAGGA 139424 ||||||| |||||| Sbjct 345620 TATACTATCGAGGA 345633 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 345633 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 345574 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 345573 CCCGTCGGGGAG 345562 >seq4 Length=952654 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || |||||| |||||||||||||||||| ||| ||||| | ||| |||||||||||||| Sbjct 649153 TAATCCTCGATAGTATAGTGGTTAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGA 649094 Query 8715 TTCCCCGACGAGGAG 8729 ||||||| || |||| Sbjct 649093 TTCCCCGTCGGGGAG 649079 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410 |||||| || |||||| |||||||||||||| ||| | |||| ||| |||| ||||||| Sbjct 649077 AACTCCCCGACGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTAACCAC 649136 Query 139411 TATACTAACGAGGATT 139426 ||||||| |||||||| Sbjct 649137 TATACTATCGAGGATT 649152 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 649150 TCCTCGATAGTATAGTGGTTAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 649091 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 649090 CCCGTCGGGGAG 649079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652821411835040