Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq65 96.9 3e-15 seq190 82.4 7e-11 seq139 82.4 7e-11 >seq65 Length=2871674 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 131920 ATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTG 131979 ||| | | |||| || || ||||| |||||||| | ||||| ||||| | || Sbjct 612039 ATGAAGGGTTGATTCCTTCTGAATATTGTAGTCTGAAAGTGTACGTCCGTCTTCCAATTG 612098 Query 131980 TTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTT 132039 || |||| |||| | | || |||||||| || |||||||||||||| ||||| Sbjct 612099 CTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCCTTCTTTATCTTGGATTTT 612158 Query 132040 TTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGT 132099 | ||| | | ||| | ||||| | | ||| ||||||| || | ||||||||||| Sbjct 612159 TGCTTTAACGTTTTCAATCGTATCTGAGGCCTCAACTTCGAGTGTAATTGTTTTACCAGT 612218 Query 132100 CAGAGTTTTTATGAAAATCTGCATGACT 132127 ||||| || | |||||| |||||| || Sbjct 612219 GAGAGTCTTGACGAAAATTTGCATGCCT 612246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||| || || | ||||| ||||| || || || || | | Sbjct 612277 GACTCCTTTTGAATGTTATAATCAGAAAGTGTACGTCCGTCTTCTAGTTGCTTTCCAGCA 612336 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || | | |||||| |||||||| || ||||| || || ||||||| ||||| Sbjct 612337 AATATCAATCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGAATTTTTGCTTTCACG 612396 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | | || || || | || | ||||||||| |||| || || Sbjct 612397 TTTTCAATTGTATCTGATGCTTCAACCTCCAGGGTTATCGTTTTACCTGTCAATGTCTTG 612456 Query 132110 ATGAAAATCTGCATGA 132125 | ||| |||||||||| Sbjct 612457 ACGAAGATCTGCATGA 612472 >seq190 Length=691288 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 |||||| | ||| | |||| ||||| |||||||| || || || || | | ||| Sbjct 255963 CAAAACAAGATGGAGTGTTGATTCTTTCTGAATGTTATAATCTGACAGAGTTCTCCCATC 255904 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 || | |||||||| | |||||| ||| || || || ||||| || |||||||| || Sbjct 255903 CTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGGAATTCCTTCTTTGTC 255844 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 |||||| ||||| | ||| | || || | | || ||||| | || | || Sbjct 255843 TTGAATTTTAGCTTTCACATTTTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTGATGGT 255784 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || ||||| | ||||||||||| Sbjct 255783 CTTACCTGTGAGCGTTTTAACAAAAATCTGCAT 255751 >seq139 Length=3030711 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||| || || || || || || |||||| |||||| | |||||| || | | | | Sbjct 1044746 CTTTCTGGATATTATAATCTGACAAGGTACGTCCATCTTCCAACTGTTTTCCAGCAAATA 1044687 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | || || |||||||| || || || ||||||||||| |||||| |||| | || Sbjct 1044686 TAAGTCGTTGTTGATCAGGTGGAATTCCTTCTTTATCCTGAATTTTAGCCTTCACATTTT 1044627 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | ||| || | | || ||||| | || | |||||||| |||| ||| || | | Sbjct 1044626 CAATAGTGTCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCTGTCAAAGTCTTCACAA 1044567 Query 132114 AAATCTGCAT 132123 | |||||||| Sbjct 1044566 ATATCTGCAT 1044557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476594125403760