Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq190 105 6e-18 seq65 104 2e-17 >seq190 Length=691288 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| |||||| | || |||||| | || || | || || |||||| Sbjct 260297 CATGCAAATTTTTGTCAAAACACTCACAGGAAAAACTATTACTCTTGAGGTAGAAGCCTC 260356 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || ||| | || ||| ||||| |||||||| || || || || || || Sbjct 260357 AGATACAATAGAGAATGTGAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGACCA 260416 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | | |||| | ||||| ||| | ||||||| |||| | | |||||||| Sbjct 260417 ACAACGTTTGATTTTTGCTGGCAAGCAATTAGAAGATGGAAGAACTCTTTCGGATTACAA 260476 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| ||||| ||||| || | ||||| || || || | ||||||| Sbjct 260477 TATCCAAAAGGAATCTACACTCCATTTGGTATTGCGACTTCGAGGAGG 260524 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || ||||| |||||| | || || | ||||| ||||| Sbjct 254839 ATGCAGATCTTTGTTAAGACCTTAACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 254898 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| ||| || || |||||||| || || || || ||| Sbjct 254899 GACACAATAGAAAATGTGAAAGCAAAGATCCAAGACAAAGAGGGAATTCCTCCAGACCAG 254958 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | |||| | || |||||| | ||||||| |||| | || ||||||||| Sbjct 254959 CAGCGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTCTCAGATTACAAT 255018 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 ||||| |||||||| || |||| || || || Sbjct 255019 ATTCAGAAAGAATCTACTCTTCACTTGGTATT 255050 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || |||||| | || || ||| | || || | ||||| ||||| Sbjct 260525 CATGCAAATCTTCGTCAAAACACTCACAGGGAAAACCATTACCTTGGAAGTAGAAGCTTC 260584 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| ||||| | || || |||||| || || || || || || || || || Sbjct 260585 TGATACAATCGAAAATGTTAAGGCGAAAATTCAAGACAAGGAAGGAATTCCTCCTGACCA 260644 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | | || | | || || ||| | ||||||| |||| | | ||||| || Sbjct 260645 GCAACGTTTGATCTTTGCTGGGAAGCAATTAGAAGATGGGAGAACTTTGTTGGATTATAA 260704 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||| ||||| || | ||||||||||| ||| | | ||||||| Sbjct 260705 CATTCAAAAGGAATCTACTCTGCATTTAGTGTTGAGACTCCGTGGAGGAA 260754 >seq65 Length=2871674 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| | || ||||| | || || | || || ||||| Sbjct 612014 ATGCAAATTTTTGTAAAAACTCTTACTGGAAAGACTATTACCTTGGAGGTTGAAGCGTCT 611955 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| ||||||| || || ||||| || || || |||||| Sbjct 611954 GATACCATTGAAAATGTCAAAGCAAAAATTCAGGACAAGGAGGGAATTCCACCAGATCAG 611895 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | | |||||| ||| | ||||||| | | | |||||| ||| Sbjct 611894 CAAAGATTGATCTTTGCCGGCAAGCAATTGGAAGATGGACGCACACTTTCCGATTATAAT 611835 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| ||||| || | ||| | || | | ||||||||||| Sbjct 611834 ATTCAAAAGGAATCAACTCTGCATCTTGTTCTTCGTTTGAGAGGAGG 611788 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || || | || || ||| | || || ||||||| || ||| Sbjct 612243 CATGCAAATTTTCGTCAAGACTCTCACTGGTAAAACAATTACACTCGAAGTTGAGGCCTC 612184 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || ||| |||||| |||||||| || || || || ||||| Sbjct 612183 AGATACGATTGAAAACGTTAAAGCAAAAATCCAAGATAAAGAAGGCATTCCACCAGATCA 612124 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTAC 25351 ||||||| | || | || |||||| ||| | ||||| | | | | ||| || ||| Sbjct 612123 GCAAAGATTGATCTTCGCCGGCAAGCAATTGGAAGACGGACGTACACTTTCA--GACTAC 612066 Query 25352 AATATTCAAAAAGAATCCACCATTCAT 25378 |||||||| || ||||| ||| ||||| Sbjct 612065 AATATTCAGAAGGAATCAACCCTTCAT 612039 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || || ||| | || || | ||||| || || Sbjct 611330 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAAGTTGAGGCTTCT 611271 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || || ||| |||||||| ||||| ||||| |||||| Sbjct 611270 GACACAATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAG 611211 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | |||| | || |||||||| ||||||| | | | ||||| || Sbjct 611210 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGACGCACACTTTCGGATTATAAC 611151 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| ||||| ||| ||||| | || | | ||||||||||| Sbjct 611150 ATCCAAAAGGAATCAACCCTTCATCTTGTTCTGCGTTTGAGAGGAGG 611104 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || || ||| | || || | ||||| || || Sbjct 611558 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAAGTTGAGGCTTCT 611499 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || || ||| |||||||| ||||| ||||| |||||| Sbjct 611498 GACACAATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAG 611439 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | |||| | || |||||||| ||||||| | | | ||||| || Sbjct 611438 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGACGCACACTTTCGGATTATAAC 611379 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| ||||| ||| ||||| | || | | ||||||||||| Sbjct 611378 ATCCAAAAGGAATCAACCCTTCATCTTGTTCTGCGTTTGAGAGGAGG 611332 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || || ||| | || || | || || || || Sbjct 611102 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAGGTTGAGGCTTCT 611043 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || || ||| |||||||| || || || || |||||| Sbjct 611042 GACACAATTGAGAATGTTAAGGCCAAGATTCAAGATAAAGAAGGCATTCCACCAGATCAG 610983 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || || | || | || |||||||||| | ||||||||| | | |||| | |||| | Sbjct 610982 CAGAGGTTGATCTTCGCCGGCAAACAATTAGAAGATGATCGTACATTGTCTG--ATTATA 610925 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||| ||||| || || ||| ||||| | || | | ||||||||||||| Sbjct 610924 ATATCCAAAAGGAGTCAACCCTTCATCTTGTTCTTCGTTTGAGAGGAGGAA 610874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445078454493120