Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq65 114 1e-20 seq190 102 7e-17 seq139 95.1 1e-14 >seq65 Length=2871674 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 35533 ATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTG 35592 |||||| || ||||||||||||||| ||||| | | || || |||| || || || Sbjct 612267 ATGTAAAGTCGACTCCTTTTGAATGTTATAATCAGAAAGTGTACGTCCGTCTTCTAGTTG 612326 Query 35593 CTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 ||| || ||||||||||| | ||| ||||| | ||||| | ||||||| | ||| || Sbjct 612327 CTTTCCAGCAAATATCAATCTCTGTTGGTCTGGAGGAATTCCTTCCTTGT-CTTGAATTT 612385 Query 35653 TTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCG 35711 |||| |||| || | | || || | ||| ||||||| || ||||||||||| | Sbjct 612386 TTGCTTTCACGTTTTCAATTGTATCTGATGCTTCAACCTCCAGGGTTATCGTTTTACCTG 612445 Query 35712 TCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || || |||||||| Sbjct 612446 TCAATGTCTTGACGAAGATCTGCAT 612470 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||| || ||||||| | || || | || |||| ||||| || ||||| Sbjct 611824 TCCTTTTGAATATTATAATCGGAAAGTGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAG 611883 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 ||||| | ||||| || | |||| | |||||||||| ||| |||||| || | | | Sbjct 611884 ATCAATCTTTGCTGATCTGGTGGAATTCCCTCCTTGTCC-TGAATTTTTGCTTTGACATT 611942 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | || || || ||| ||||||| || || || || || || | |||||| || Sbjct 611943 TTCAATGGTATCAGACGCTTCAACCTCCAAGGTAATAGTCTTTCCAGTAAGAGTTTTTAC 612002 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 612003 AAAAATTTGCAT 612014 >seq190 Length=691288 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || |||||||| || || | || |||| | | || || | ||| ||||| ||||| Sbjct 255713 TCTTTCTGAATGTTATAGTCTGACAGAGTTCTCCCATCTTCTAACTGTTTACCAGCAAAG 255654 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||||||||| | ||||| | ||| ||||| ||||||| |||| | Sbjct 255653 ATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCTTGGATCTTTGTTTTCACGTTC 255594 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||| | | ||| || |||| ||||| ||||| || ||||| ||||| ||| Sbjct 255593 TCTATTGTGCCAGAAGCTTCTACTTCCAAGGTGATGGTTTTTCCTGTCAATGTTTTGACA 255534 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 255533 AAGATCTGCAT 255523 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | |||||||| ||||| | ||| |||||||||||||| ||||| Sbjct 260754 TTCCTCCACGGAGTCTCAACACTAAATGCAGAGTAGATTCCTTTTGAATGTTATAATCCA 260695 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| |||| | | || || | ||||| || ||||| ||||| || |||||||| | || Sbjct 260694 ACAAAGTTCTCCCATCTTCTAATTGCTTCCCAGCAAAGATCAAACGTTGCTGGTCAGGAG 260635 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| | ||||||| | ||| ||| | ||| | | || | | || || | ||| Sbjct 260634 GAATTCCTTCCTTGT-CTTGAATTTTCGCCTTAACATTTTCGATTGTATCAGAAGCTTCT 260576 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || || ||||| || || | ||||| || || || ||||| Sbjct 260575 ACTTCCAAGGTAATGGTTTTCCCTGTGAGTGTTTTGACGAAGATTTGCAT 260526 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | ||| ||||| || | ||| || || ||||| |||||||| | Sbjct 255065 CCGCCACGAAGTCGCAATACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAATCTGAG 255006 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||| | || || | || ||||| ||||| ||||| ||||||||||| | |||| Sbjct 255005 AGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGCTGCTGGTCTGGAGGA 254946 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| ||||| ||||||| |||| | || | | ||||| | ||| || Sbjct 254945 ATTCCCTCTTTGTCTTGGATCTTTGCTTTCACATTTTCTATTGTGTCAGAAGCTTCAACT 254886 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || ||||| || || || || || ||||| |||||||| Sbjct 254885 TCAAGAGTAATAGTTTTTCCTGTTAAGGTCTTAACAAAGATCTGCAT 254839 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | || || || ||||| | ||| |||||||||||||||||||| | Sbjct 256433 CCACCTCGGAGTCTTAAAACTAAATGGAGTGTAGATTCCTTTTGAATGTTGTAATCCAAC 256374 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || |||| | || || | |||||| || ||||| ||||| || ||||| || | |||| Sbjct 256373 AAAGTTCTTCCATCTTCTAACTGCTTCCCAGCAAAGATCAAACGTTGCTGATCAGGAGGA 256314 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | || |||| | ||| ||| || |||| || | | ||||| | ||| || Sbjct 256313 ATTCCTTCTTTGT-CTTGAATTTTAGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCTAC 256255 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| ||||| || || | || || ||||| || ||||| Sbjct 256254 TTCCAAAGTGATGGTTTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 256207 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || ||||| ||||| | || |||| | || || | ||| ||||| || || Sbjct 256169 TCTTTCTGTATGTTATAATCTGACAGAGTTCTTCCATCCTCTAACTGTTTACCAGCGAAG 256110 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 ||||| ||||||||||| | ||||| | || |||| | ||| ||| || |||| | | Sbjct 256109 ATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTGT-CTTGAATTTTAGCTTTCACATT 256051 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | ||| || || | |||||| ||||| || ||||| ||||| || Sbjct 256050 CTCTATTGTGTCTGAAGCTTCTACTTCTAACGTGATGGTTTTTCCTGTCAATGTTTTGAC 255991 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 255990 AAAGATTTGCAT 255979 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 |||||||||||||| | ||| |||||| ||||||||||| || | | |||| | | Sbjct 260284 CTCAACACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTTCTCCCA 260225 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || || | || ||||| || || || || || |||||||| | ||||| | || ||| Sbjct 260224 TCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGGAATTCCTTCTTTG 260165 Query 35642 TCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGAT 35700 | | ||| ||| | ||| | | | | | ||||| | || ||||| | || || Sbjct 260164 T-CTTGAATTTTCGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTACCTCGAGAGTAAT 260106 Query 35701 CGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || || | ||||| ||||| |||||||| Sbjct 260105 AGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCAT 260070 >seq139 Length=3030711 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 35547 CCTTT-TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || || || ||||| | |||||| || | || |||| ||| || || |||||| Sbjct 1044747 CCTTTCTGGATATTATAATCTGACAAGGTACGTCCATCTTCCAACTGTTTTCCAGCAAAT 1044688 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 || | || || || || | |||| | || || ||| ||| ||| || |||| | | Sbjct 1044687 ATAAGTCGTTGTTGATCAGGTGGAATTCCTTCTTTATCC-TGAATTTTAGCCTTCACATT 1044629 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | ||| || || | ||||| |||||||| |||||||| ||||| Sbjct 1044628 TTCAATAGTGTCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCTGTCAAAGTCTTCAC 1044569 Query 35725 AAATATCTGCATTCTG 35740 ||||||||||||| || Sbjct 1044568 AAATATCTGCATTGTG 1044553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450777450319280