Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq64 185 1e-41 seq25 127 3e-24 >seq64 Length=2955609 Score = 185 bits (204), Expect = 1e-41 Identities = 216/289 (75%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 68643 TATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTC-TAAGGA 68701 ||||||| || || || || |||| ||| | | ||| || |||| | ||| ||| | Sbjct 1698002 TATAATTTCGTTTTTCATGTCCTCATCCCAAAGATCTCTTTCAGTTAGATCTCGTAATAA 1697943 Query 68702 GATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGG 68761 | || || || || ||||| ||||| ||||| | ||||| | | |||||||| |||| Sbjct 1697942 G-TGAGGGTTTACAATTTGGAATTCTCCAGACAGAACTCTTCTTGCATAAATATTGCTGG 1697884 Query 68762 TATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAG 68821 |||||||||| | |||||||||||||| | |||||| ||||| ||||| |||||||||| Sbjct 1697883 TATATGGTTCTATGGATTCATTATTTCCTAAAATTTGTGCAGTAGATGCTGTTGGCATAG 1697824 Query 68822 GTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCC 68881 |||| | | |||| |||||||| |||||| | ||||| ||||| | | | ||| Sbjct 1697823 GTGCAATTAGTAAAGAATTTCTAATTCCATGTTTAGCAATTTTTTCTTTCAAAATTGTCC 1697764 Query 68882 AATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 ||| ||| | ||||| ||| ||||||||| | ||| ||||||| ||| Sbjct 1697763 AATTCCATAAATCAGTTGGAGTAACATTCCACATATCATATTGTAAAAT 1697715 Score = 165 bits (182), Expect = 1e-35 Identities = 216/298 (72%), Gaps = 1/298 (0%) Strand=Plus/Minus Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || || ||||||||||||||||| | ||| || | ||||| | |||||||||||| | | Sbjct 1696663 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCCAAA 1696604 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 ||||| || | |||| |||| |||||||||||| ||||| | || | || |||||| Sbjct 1696603 TATATAGCAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATACCGAGCTGTGTTA 1696544 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 || || ||||| | ||| ||||| | |||||||||| |||| ||| |||| || Sbjct 1696543 TTGTATACTCTGATCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 1696484 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 | ||| |||| |||||| | | | || || || || || || |||| || Sbjct 1696483 GTACCTTTTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCTGATTTACTAATA 1696424 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCA-TGTTA 69957 || ||||| | ||| ||||| ||||| || || || ||||||||||| ||| ||||| Sbjct 1696423 AGTGCACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCATCACTCATTGTTA 1696366 Score = 129 bits (142), Expect = 8e-25 Identities = 129/165 (78%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 69505 GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA 69564 ||||| || ||| |||||||| ||||||| |||| | |||||| |||||| |||| Sbjct 1696901 GTATAGAGAGCTTCAAATTCATCGCCCCAAATATCAGGTAGACCAGGAGATTCATGTGGA 1696842 Query 69565 CACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAA 69624 ||||| || ||||| ||| ||| ||| ||||||||||||||| ||||| || ||||| Sbjct 1696841 CACATTAAAGACCATACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGTATCCAT 1696782 Query 69625 AGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 ||||| ||| || | ||||| | ||||| |||||| || ||||| Sbjct 1696781 AGAGC-ATAGAATAATTCTCTCGCTCTATGTTCTTCCTTACCTGT 1696738 Score = 120 bits (132), Expect = 4e-22 Identities = 232/343 (68%), Gaps = 6/343 (2%) Strand=Plus/Minus Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAA 69175 |||| |||||||| ||||| |||||| ||| |||| ||||| ||||| || |||| Sbjct 1697374 TACCTATAGGTCTGTGTCTAAAATTTGATGTTTTCGCTTGTGGAACTGGATAGTAGTTAA 1697315 Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAA 69235 ||| |||||||||| ||||| | || | ||| || | | ||||| ||| Sbjct 1697314 CATCGATAATTTTATCTAGATTACAAGTAACAATTTTTGTAACTTGCAAAAGTTTTTGAA 1697255 Query 69236 AATCAAATCGTCCATCTATA------ACAAACATATTCAGTGCTACAGATGCTAGATTAC 69289 |||||||| || || | | ||||||||||| | || | || || | ||||| Sbjct 1697254 AATCAAATGTTCGATTGAGAGGATTTACAAACATATTGACCGCGATTGAAGCCAAATTAC 1697195 Query 69290 AAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATT 69349 | || || | |||| | | | | | | |||| || |||||||| | |||||||| || Sbjct 1697194 ACACAGCGATTTCATCTGGACTGGAAAACTGTACGATTTCTGTACACAAATTACTACTTT 1697135 Query 69350 TGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAA 69409 |||| || || | |||||| ||||| || || || || || ||||| ||| Sbjct 1697134 TGATTGTTCCTATATTTTGATGATTTGATTTACGATTGCAATGATCTTTATAAAGCATAT 1697075 Query 69410 ACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA 69452 | ||||| || ||||||| |||| | | ||||| | |||| Sbjct 1697074 AAGGAGTTCCTGTTTCAACTTGAGCGACAAGAATAGCTGTCCA 1697032 Score = 113 bits (124), Expect = 6e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 ||| |||||||| | ||||| || | |||| |||||||| || || ||||| |||||||| Sbjct 1697610 ATAAGTTTCATATGTTCCTTTCTCTGCAGCAAGTTCACAGCTAGCTTCTAAGGCACCGTA 1697551 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 ||| | |||||| || || | |||| || | ||||||||| ||| || |||||||| Sbjct 1697550 ATATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCCTCACTTTCAAATGGATA 1697491 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 | | | || ||| |||||||| | ||||||| ||||| || Sbjct 1697490 TCGCATTAAAAGAAACGCATCTGCGAGACCCTGAATTCCAATCCC 1697446 Score = 95.1 bits (104), Expect = 2e-14 Identities = 182/266 (68%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 ||||||||||| || || |||| | ||| ||| | ||| |||||||| ||||| || Sbjct 1696286 CTAGACATTTGCTGTCGTCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGAGTAAAA 1696227 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAAT 70088 | ||| || | | ||||||||||| ||| || || ||||| ||| ||| || Sbjct 1696226 TAACGTTCTGATAAAAAGTTGTATGTTTCTATAACTTTATCAATATCTTCAC-CATGGAT 1696168 Query 70089 TCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTT 70148 | | || || | ||| | |||||| || |||| ||| || ||| || ||| || Sbjct 1696167 AGCAACTGCAACTCTCATTAGCATATGTTGTGGTCTTTCAACAACTTTCCCATGTATCTT 1696108 Query 70149 CAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTC 70208 || | || ||| || || || ||||| ||||| || || || ||| ||||| || Sbjct 1696107 TAATAAATAACTTTTCTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAATCTCTATC 1696048 Query 70209 GTAAATAATAACAGAATTTAGTTTAT 70234 ||||| || | ||||||| ||||| Sbjct 1696047 ATAAATTATTGCGGAATTTAATTTAT 1696022 >seq25 Length=3544016 Score = 127 bits (140), Expect = 3e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 39886 ATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAA 39945 ||||||||| ||||| | | |||||||||||| || | ||||| || || || ||||| Sbjct 2908036 ATATGTATCAATTAATAAAGAATACATTTCTGAGTGTACATTTTCCATGGCGATTTGAAA 2908095 Query 39946 TCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATT 40005 || || || || | |||||| || |||||||| ||| || ||||| ||| | | ||| Sbjct 2908096 GCCATAGAAGCAACGTGCTTCTGTTATTTGTACTTCTTGACTAAATCGTTCGACGAGATT 2908155 Query 40006 TTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTT 40065 ||||| || ||||||||| ||||||||| ||||| || || | ||||||| ||| Sbjct 2908156 CTCATTGACAATTCCATCAGAAGCGGCAAAGAATGCTAAGACGTAAGATATAAAATGTTT 2908215 Query 40066 TTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTT 40105 || | | | || |||||||||| |||||||| Sbjct 2908216 CTCTTTGTTATTTAAACTATTCCAGTCCAACGTATCTTTT 2908255 Score = 109 bits (120), Expect = 8e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 39422 TTTTTAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATC 39481 |||| | | |||||||| || || || || ||||||||||| || ||| ||| Sbjct 2907284 TTTTCACAGCCTAATTCAATAAGTAACCTGTCAGCAACAAATTCGATATATTGACACATA 2907343 Query 39482 ATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCG 39541 | || ||||||||||||||| | || ||| |||| || ||||||| ||| |||| ||| Sbjct 2907344 AGTTTACAATTCATTCCTATCATTTCAACAGGTAAGGCATCCGTTAAAAATTCTTGTTCA 2907403 Query 39542 ATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAA 39601 || | || || ||| | || || ||||| ||| || | ||| || | | Sbjct 2907404 ATTTTGACAGCATCTTTAATAATTGATGTGACTCGTTCGGAAGATGGTTTTTGTATAATG 2907463 Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 ||||| |||||||| || ||||| ||||||||||| |||| Sbjct 2907464 TGTTTGAACATTAAACATGCGAAATCACAATGTAGTCCCT 2907503 Score = 89.7 bits (98), Expect = 7e-13 Identities = 154/222 (69%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||||||| ||| | || ||| |||||| ||||| ||||| ||||| | ||||| Sbjct 2907697 TCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCCGGCATAAGACCTCTTTTTTTC 2907756 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 | ||| || || ||||||||| || || || || ||||| ||||| ||||||||| Sbjct 2907757 AACCAGAAAATAGCAGCAAAACTGCCGCTGAAAAATATACCTTCCACTGCAGCAAATGCA 2907816 Query 39761 ACAAGTCTCTCTCCGTAACTTG----TATCATTATGTATCCACTTCTGTGCCCAATCAGC 39816 || | | || | ||| || | |||| | |||||| || |||||| | ||| Sbjct 2907817 ACTACACGTTC-AGGGAACGTGGCACTTTCATGGTTTATCCAATTTAATGCCCACTGAGC 2907875 Query 39817 TTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 ||| || | ||||| || | | || || |||||||| || Sbjct 2907876 TTTTTTTGTAACACATGGTAAATTCTCAATTGCATTAAATAG 2907917 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||| |||||| ||| || ||||| || || ||| ||||||||||| ||||| ||||| Sbjct 2907100 CATTACTCCCCATTTCTGATATTCTCCCACCTTTTTTTCGAAAAAATTTGTTTTACCTTC 2907159 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATT 39405 ||| || |||| ||||| |||||||||||||| Sbjct 2907160 CAAAGAGATATGCTCCATAAAATCAAACGGATT 2907192 Score = 86.0 bits (94), Expect = 9e-12 Identities = 124/170 (73%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 40043 AATACATGTTTAATAAA-ATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101 |||| || ||||| | |||||||| | ||| ||| |||| || |||| ||| | Sbjct 2908259 AATATATTATTAATTTATATATTTTTAAAAAAATGT-AATCTATTTGAGGCATT-ATA-C 2908315 Query 40102 TTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTT 40161 ||| || | ||| ||||| || | |||||||| || || || || ||||||||||| | Sbjct 2908316 TTTAGAGAGATCCACTTCCTCCACAGTCCAAAAAGAGGCTTCCGCTTTTTTGTACATTTG 2908375 Query 40162 CCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTT 40211 ||| || ||| | |||| || || |||| |||||| ||| |||||||| Sbjct 2908376 CCAAATGTCAGGCCATTGAATAGGGAAAACAACAAACCTACGTGGATTTT 2908425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686884191492240